Best TWAS P=2.47e-08 · Best GWAS P=3.56e-07 conditioned to 0.00718
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CHP | 0.06 | 0.01 | blup | 54 | 0.03 | 4.7e-04 | -2.8 | 5.6 | 2.5e-08 | -0.49 | 0.04 | 0.11 | TRUE |
| 2 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CHP | 0.21 | 0.11 | lasso | 4 | 0.12 | 5.1e-13 | -5.1 | 5.2 | 1.7e-07 | -0.92 | 0.00 | 1.00 | FALSE |