Best TWAS P=3.41e-08 · Best GWAS P=3.96e-07 conditioned to 0.00433
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Vagina | AC021860.1 | 0.42 | 0.04 | lasso | 12 | 0.07 | 1.2e-02 | 4.1 | 5.5 | 3.4e-08 | 0.46 | 0.02 | 0.19 | TRUE |
| 2 | GTEx | Vagina | RP11-617D20.1 | 0.31 | 0.01 | lasso | 8 | 0.02 | 1.4e-01 | 3.8 | 5.4 | 7.7e-08 | 0.79 | 0.02 | 0.23 | FALSE |
| 3 | GTEx | Whole Blood | RP11-617D20.1 | 0.14 | 0.06 | lasso | 3 | 0.05 | 4.2e-05 | -4.6 | 5.2 | 1.9e-07 | 0.84 | 0.01 | 0.96 | FALSE |