Best TWAS P=1.98e-09 · Best GWAS P=7.23e-13 conditioned to 0.00248
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Cells Transformed fibroblasts | BTBD7 | 0.16 | 0.01 | lasso | 8 | 0.04 | 3.6e-04 | -5.7 | 5.9 | 3.9e-09 | -0.58 | 0.10 | 0.88 | TRUE |
| 2 | GTEx | Colon Sigmoid | RIN3 | 0.24 | 0.17 | lasso | 6 | 0.11 | 9.3e-05 | -6.1 | 6.0 | 2.0e-09 | -0.02 | 0.00 | 0.99 | TRUE |
| 3 | The Cancer Genome Atlas | Brain Lower Grade Glioma | C14orf142 | 0.11 | 0.04 | enet | 7 | 0.05 | 7.2e-07 | 3.6 | -5.6 | 2.9e-08 | 0.22 | 0.50 | 0.08 | TRUE |
| 4 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | BTBD7 | 0.02 | 0.01 | blup | 72 | 0.02 | 6.8e-03 | -5.7 | 5.8 | 8.2e-09 | -0.80 | 0.01 | 0.88 | FALSE |
| 5 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | BTBD7 | 0.11 | 0.03 | blup | 72 | 0.02 | 8.0e-02 | -5.7 | 5.5 | 3.1e-08 | -0.56 | 0.02 | 0.78 | FALSE |