Best TWAS P=5.27e-11 · Best GWAS P=3.05e-14 conditioned to 0.000389
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | UBXN2A | 0.22 | 0.18 | enet | 28 | 0.24 | 3.0e-28 | -7.1 | 6.5 | 6.2e-11 | -0.61 | 0.06 | 0.94 | FALSE |
2 | GTEx | Cells EBV-transformed lymphocytes | PFN4 | 0.18 | 0.13 | lasso | 12 | 0.12 | 8.9e-05 | -4.5 | -5.8 | 6.4e-09 | 0.61 | 0.24 | 0.31 | FALSE |
3 | GTEx | Colon Transverse | UBXN2A | 0.11 | 0.01 | enet | 8 | 0.03 | 8.7e-03 | -5.0 | -5.1 | 3.1e-07 | 0.18 | 0.21 | 0.16 | FALSE |
4 | GTEx | Esophagus Gastroesophageal Junction | PFN4 | 0.13 | 0.01 | lasso | 12 | 0.01 | 9.7e-02 | -5.9 | -5.7 | 1.5e-08 | 0.54 | 0.08 | 0.34 | FALSE |
5 | GTEx | Esophagus Mucosa | TP53I3 | 0.16 | 0.03 | enet | 23 | 0.06 | 8.2e-05 | 2.0 | -5.6 | 2.1e-08 | 0.29 | 0.11 | 0.10 | FALSE |
6 | GTEx | Heart Atrial Appendage | UBXN2A | 0.08 | 0.02 | lasso | 3 | 0.02 | 5.2e-02 | -6.3 | -6.5 | 8.8e-11 | 0.56 | 0.18 | 0.46 | FALSE |
7 | GTEx | Heart Atrial Appendage | PFN4 | 0.22 | 0.06 | lasso | 7 | 0.10 | 2.8e-05 | 2.0 | -5.9 | 3.0e-09 | 0.64 | 0.05 | 0.93 | FALSE |
8 | GTEx | Heart Left Ventricle | PFN4 | 0.23 | 0.28 | lasso | 6 | 0.28 | 4.1e-15 | -4.5 | -5.7 | 1.5e-08 | 0.62 | 0.97 | 0.03 | FALSE |
9 | GTEx | Spleen | UBXN2A | 0.31 | 0.11 | enet | 19 | 0.17 | 4.1e-05 | 6.3 | -6.1 | 1.1e-09 | 0.41 | 0.32 | 0.33 | TRUE |
10 | METSIM | Adipose | UBXN2A | 0.07 | 0.03 | bslmm | 403 | 0.06 | 5.3e-10 | -5.0 | -5.3 | 1.3e-07 | 0.40 | 0.22 | 0.78 | FALSE |
11 | ROSMAP | Brain Pre-frontal Cortex | UBXN2A | 0.03 | 0.01 | lasso | 4 | 0.02 | 2.2e-03 | -6.2 | 6.6 | 5.3e-11 | -0.52 | 0.21 | 0.41 | TRUE |
12 | The Cancer Genome Atlas | Brain Lower Grade Glioma | UBXN2A | 0.04 | 0.04 | lasso | 1 | 0.03 | 1.4e-04 | -6.2 | 6.2 | 5.2e-10 | -0.57 | 0.16 | 0.62 | FALSE |