[Hub]/) : Traits : Arm fat percentage (left) :

chr11:130,038,487-131,476,599

Best TWAS P=4.37e-14 · Best GWAS P=7.02e-13 conditioned to 0.0047

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 CommonMind Brain Pre-frontal Cortex SNX19 0.21 0.21 lasso 6 0.22 6.7e-26 5.8 -5.5 3.0e-08 0.49 0.98 0.02 FALSE
2 GTEx Adipose Subcutaneous SNX19 0.21 0.15 enet 24 0.16 2.3e-13 5.9 -6.8 1.2e-11 0.73 0.48 0.52 FALSE
3 GTEx Adipose Visceral Omentum SNX19 0.22 0.10 lasso 7 0.10 8.0e-06 5.9 -6.7 2.9e-11 0.63 0.20 0.80 FALSE
4 GTEx Adrenal Gland SNX19 0.24 0.16 lasso 4 0.06 3.2e-03 5.7 -6.5 5.7e-11 0.58 0.21 0.78 FALSE
5 GTEx Artery Aorta SNX19 0.39 0.15 lasso 6 0.28 1.1e-15 5.6 -5.6 1.8e-08 0.54 0.11 0.89 FALSE
6 GTEx Artery Aorta RP11-890B15.3 0.19 0.01 enet 1 0.00 4.8e-01 5.6 -5.5 2.8e-08 0.50 0.07 0.28 FALSE
7 GTEx Artery Coronary SNX19 0.25 0.16 lasso 11 0.18 1.4e-06 5.9 -5.8 9.1e-09 0.55 0.56 0.34 FALSE
8 GTEx Artery Tibial SNX19 0.22 0.14 lasso 6 0.20 1.5e-15 -3.3 -5.9 4.0e-09 0.57 0.22 0.78 FALSE
9 GTEx Brain Caudate basal ganglia SNX19 0.33 0.12 lasso 5 0.12 2.8e-04 5.9 -7.0 3.5e-12 0.57 0.11 0.79 FALSE
10 GTEx Brain Cerebellar Hemisphere SNX19 0.33 0.23 lasso 7 0.28 7.2e-08 -2.7 -5.1 3.1e-07 0.49 0.13 0.76 FALSE
11 GTEx Brain Cortex SNX19 0.36 0.12 lasso 7 0.16 3.3e-05 5.5 -6.5 8.8e-11 0.53 0.07 0.88 FALSE
12 GTEx Brain Frontal Cortex BA9 SNX19 0.41 0.20 lasso 7 0.37 7.1e-11 -6.4 -6.9 5.1e-12 0.52 0.09 0.88 FALSE
13 GTEx Brain Hippocampus SNX19 0.24 0.07 enet 17 0.16 1.8e-04 -6.4 -6.7 2.6e-11 0.49 0.09 0.71 FALSE
14 GTEx Brain Hypothalamus SNX19 0.32 0.04 lasso 5 0.13 7.4e-04 6.4 -7.5 4.4e-14 0.67 0.08 0.86 TRUE
15 GTEx Brain Nucleus accumbens basal ganglia RP11-890B15.3 0.46 0.16 lasso 7 0.04 3.9e-02 -5.3 -5.4 5.2e-08 0.36 0.10 0.14 FALSE
16 GTEx Brain Putamen basal ganglia SNX19 0.35 -0.01 enet 18 0.02 1.4e-01 -2.2 -5.8 5.2e-09 0.30 0.06 0.34 FALSE
17 GTEx Breast Mammary Tissue (Female) RP11-890B15.3 0.17 0.01 lasso 4 0.02 1.0e-01 5.8 -5.5 5.0e-08 0.56 0.06 0.19 FALSE
18 GTEx Cells EBV-transformed lymphocytes SNX19 0.29 0.28 lasso 2 0.26 5.1e-09 5.9 -5.9 3.1e-09 0.55 0.81 0.18 FALSE
19 GTEx Colon Sigmoid SNX19 0.34 0.10 lasso 7 0.28 2.2e-10 5.9 -5.4 5.4e-08 0.49 0.56 0.44 FALSE
20 GTEx Esophagus Gastroesophageal Junction SNX19 0.35 0.07 enet 29 0.22 1.7e-08 6.1 -5.7 1.5e-08 0.70 0.12 0.87 FALSE
21 GTEx Esophagus Muscularis SNX19 0.31 0.18 enet 23 0.25 1.2e-15 5.7 -6.9 5.4e-12 0.76 0.11 0.89 FALSE
22 GTEx Heart Atrial Appendage SNX19 0.50 0.20 enet 32 0.32 4.9e-15 -6.9 -7.1 1.1e-12 0.83 0.02 0.98 FALSE
23 GTEx Heart Left Ventricle SNX19 0.21 0.06 lasso 4 0.05 9.7e-04 5.9 -6.7 1.7e-11 0.59 0.11 0.85 FALSE
24 GTEx Pancreas SNX19 0.35 0.12 enet 19 0.27 1.2e-11 5.9 -6.0 1.8e-09 0.63 0.12 0.88 FALSE
25 GTEx Pancreas RP11-890B15.3 0.16 0.02 lasso 2 0.01 1.9e-01 -7.0 -6.9 4.2e-12 0.60 0.06 0.84 FALSE
26 GTEx Skin Not Sun Exposed Suprapubic RP11-890B15.3 0.22 0.13 enet 16 0.21 9.0e-12 -3.3 -5.8 6.0e-09 0.49 0.96 0.04 FALSE
27 GTEx Stomach SNX19 0.39 0.29 lasso 13 0.27 2.0e-13 5.9 -6.9 5.9e-12 0.70 0.59 0.41 FALSE
28 GTEx Testis SNX19 0.59 0.25 enet 24 0.38 7.1e-18 -7.0 -6.7 1.6e-11 0.68 0.03 0.97 FALSE
29 METSIM Adipose RP11-890B15.3 0.12 0.12 lasso 5 0.12 9.4e-17 5.8 -5.9 4.6e-09 0.48 0.90 0.10 FALSE
30 METSIM Adipose SNX19 0.16 0.20 lasso 2 0.20 1.5e-28 5.8 -5.7 1.1e-08 0.54 0.98 0.02 FALSE
31 NTR Blood SNX19 0.06 0.05 lasso 6 0.06 9.9e-19 -3.4 -5.9 2.9e-09 0.53 0.99 0.01 FALSE
32 ROSMAP Brain Pre-frontal Cortex SNX19 0.41 0.49 lasso 6 0.51 2.7e-75 5.8 -6.8 8.9e-12 0.61 0.98 0.02 FALSE
33 The Cancer Genome Atlas Esophageal Carcinoma SNX19 0.15 0.08 lasso 6 0.12 1.4e-04 5.8 -6.8 8.7e-12 0.66 0.21 0.53 FALSE
34 The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma SNX19 0.11 0.19 enet 15 0.24 3.2e-26 5.8 -6.5 6.9e-11 0.61 0.94 0.06 FALSE
35 The Cancer Genome Atlas Brain Lower Grade Glioma SNX19 0.17 0.20 lasso 6 0.23 9.8e-26 5.8 -6.4 1.7e-10 0.61 0.91 0.09 FALSE
36 The Cancer Genome Atlas Liver Hepatocellular Carcinoma SNX19 0.12 0.05 blup 98 0.07 3.0e-04 -3.4 -6.0 1.9e-09 0.49 0.22 0.31 FALSE
37 The Cancer Genome Atlas Pancreatic Adenocarcinoma SNX19 0.06 0.04 blup 100 0.06 1.3e-03 5.8 -7.0 3.4e-12 0.76 0.05 0.42 FALSE
38 The Cancer Genome Atlas Thyroid Carcinoma SNX19 0.24 0.23 lasso 8 0.32 2.6e-32 -3.4 -5.5 3.9e-08 0.52 1.00 0.00 FALSE