Best TWAS P=2.05e-11 · Best GWAS P=1.58e-11 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Skin Not Sun Exposed Suprapubic | TEX10 | 0.10 | 0.09 | lasso | 4 | 0.10 | 3.1e-06 | 4.7 | 5.9 | 4.4e-09 | 0.92 | 0.02 | 0.98 | FALSE |
2 | GTEx | Skin Sun Exposed Lower leg | INVS | 0.19 | 0.06 | enet | 30 | 0.11 | 1.5e-09 | 5.4 | 5.6 | 1.9e-08 | 0.79 | 0.02 | 0.98 | FALSE |
3 | GTEx | Skin Sun Exposed Lower leg | TEX10 | 0.27 | 0.27 | lasso | 8 | 0.28 | 7.0e-23 | 6.7 | 6.7 | 2.1e-11 | 1.00 | 0.01 | 0.99 | TRUE |
4 | YFS | Blood | INVS | 0.15 | 0.14 | lasso | 7 | 0.24 | 1.4e-77 | 2.0 | 5.1 | 2.9e-07 | 0.78 | 0.02 | 0.98 | FALSE |
5 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | INVS | 0.27 | 0.05 | lasso | 8 | 0.13 | 3.4e-11 | 5.6 | 5.2 | 2.6e-07 | 0.68 | 0.20 | 0.80 | FALSE |
6 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | INVS | 0.10 | 0.03 | blup | 107 | 0.07 | 4.0e-04 | 6.5 | 6.0 | 2.2e-09 | 0.89 | 0.01 | 0.96 | FALSE |
7 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | INVS | 0.09 | 0.02 | enet | 11 | 0.04 | 4.0e-05 | 5.6 | 5.4 | 6.5e-08 | 0.66 | 0.02 | 0.77 | FALSE |
8 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | INVS | 0.16 | 0.12 | enet | 8 | 0.08 | 2.8e-04 | 5.3 | 5.5 | 3.0e-08 | 0.77 | 0.26 | 0.62 | FALSE |
9 | The Cancer Genome Atlas | Prostate Adenocarcinoma | INVS | 0.09 | 0.04 | enet | 14 | 0.06 | 1.5e-06 | 5.6 | 5.3 | 9.1e-08 | 0.75 | 0.04 | 0.94 | FALSE |