Best TWAS P=9.21e-08 · Best GWAS P=2.54e-07 conditioned to 0.0038
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CHP | 0.06 | 0.01 | blup | 54 | 0.03 | 4.7e-04 | -2.8 | 5.3 | 9.2e-08 | -0.49 | 0.05 | 0.14 | TRUE |
| 2 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CHP | 0.21 | 0.11 | lasso | 4 | 0.12 | 5.1e-13 | -5.2 | 5.3 | 9.7e-08 | -0.92 | 0.00 | 1.00 | FALSE |