TWAS
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Traits
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Traits
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Arm fat-free mass (left)
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chr19:16,643,043-18,026,794
Best TWAS P=6.68e-08 · Best GWAS P=1.87e-06 conditioned to 2.25e-05
16.6M
16.8M
17M
17.2M
17.4M
17.6M
17.8M
18M
0
1
2
3
4
5
6
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Stomach Adenocarcinoma
OCEL1
0.18
0.08
blup
53
0.11
1.4e-08
-4.2
-5.4
6.7e-08
-0.10
0.00
0.86
TRUE
1
GTEx
Esophagus Mucosa
OCEL1
0.20
0.08
enet
16
0.10
1.8e-07
-4.2
-5.2
1.7e-07
-0.18
0.01
0.92
FALSE
2
The Cancer Genome Atlas
Prostate Adenocarcinoma
OCEL1
0.16
0.05
blup
53
0.10
1.6e-10
-3.5
-5.2
2.6e-07
-0.11
0.01
0.68
FALSE