[Hub]/) : Traits : Arm predicted mass (left) : ← →

chr9:138,628,816-140,321,666

Best TWAS P=7.59e-10 · Best GWAS P=1.68e-07 conditioned to 0.0457

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 GTEx Brain Caudate basal ganglia SNHG7 0.37 0.10 lasso 6 0.27 2.5e-08 -3.0 5.9 3.8e-09 0.39 0.07 0.56 FALSE
2 GTEx Ovary INPP5E 0.24 0.13 enet 11 0.15 1.9e-04 4.9 -6.2 7.6e-10 -0.59 0.04 0.72 TRUE
3 GTEx Ovary SEC16A 0.33 0.06 enet 10 0.14 3.4e-04 4.4 -5.5 3.7e-08 -0.45 0.04 0.29 FALSE
4 GTEx Uterus INPP5E 0.60 0.04 enet 10 0.22 3.4e-05 5.1 -5.3 1.4e-07 -0.53 0.04 0.56 FALSE
5 GTEx Whole Blood SEC16A 0.07 0.05 lasso 5 0.04 1.3e-04 4.6 -5.2 2.0e-07 -0.72 0.07 0.91 FALSE
6 The Cancer Genome Atlas Cervical Squamous Cell Carcinoma INPP5E 0.25 0.10 lasso 3 0.09 4.9e-05 5.1 -5.3 1.1e-07 -0.73 0.01 0.96 FALSE
7 The Cancer Genome Atlas Kidney Renal Papillary Cell Carcinoma INPP5E 0.07 0.04 blup 54 0.07 6.0e-05 5.3 -5.5 3.3e-08 -0.84 0.01 0.95 FALSE
8 The Cancer Genome Atlas Testicular Germ Cell Tumors INPP5E 0.10 0.06 blup 54 0.08 8.1e-04 4.5 -5.2 2.7e-07 -0.82 0.03 0.73 FALSE