TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Trunk predicted mass
:
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chr1:150,000,165-150,847,647
Best TWAS P=7.89e-09 · Best GWAS P=7.18e-12 conditioned to 1.12e-09
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
The Cancer Genome Atlas
Breast Invasive Carcinoma
C1orf54
0.06
0.02
enet
13
0.02
1.2e-05
5.1
-5.8
7.9e-09
-0.14
0.00
0.98
TRUE
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
MRPS21
0.13
0.13
enet
10
0.13
1.7e-14
-4.2
5.5
3.8e-08
0.38
0.04
0.90
FALSE
2
The Cancer Genome Atlas
Head and Neck Squamous Cell Carcinoma
C1orf54
0.04
0.04
lasso
2
0.03
2.0e-04
5.1
-5.2
1.7e-07
-0.47
0.00
0.99
FALSE