Best TWAS P=1.2e-09 · Best GWAS P=4.03e-11 conditioned to 7.25e-06
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Visceral Omentum | RAD52 | 0.14 | 0.07 | lasso | 3 | 0.10 | 1.1e-05 | -4.2 | -5.5 | 3.8e-08 | -0.44 | 0.10 | 0.89 | TRUE |
| 2 | GTEx | Artery Tibial | B4GALNT3 | 0.49 | 0.24 | enet | 24 | 0.34 | 6.5e-28 | 5.3 | -6.1 | 1.2e-09 | -0.02 | 0.86 | 0.14 | TRUE |
| 3 | GTEx | Testis | RAD52 | 0.29 | 0.19 | lasso | 3 | 0.18 | 2.3e-08 | 6.0 | -5.3 | 8.9e-08 | -0.49 | 0.04 | 0.96 | FALSE |
| 4 | The Cancer Genome Atlas | Esophageal Carcinoma | RAD52 | 0.25 | 0.13 | blup | 66 | 0.19 | 1.1e-06 | 6.5 | -5.5 | 4.0e-08 | -0.61 | 0.00 | 0.99 | FALSE |