Best TWAS P=4.95e-17 · Best GWAS P=8.77e-18 conditioned to 0.000285
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | WFS1 | 0.10 | 0.03 | lasso | 2 | 0.02 | 4.8e-04 | -8.1 | 8.1 | 4.7e-16 | -0.73 | 0.06 | 0.90 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | WFS1 | 0.72 | 0.49 | lasso | 13 | 0.47 | 1.3e-13 | -8.0 | 8.0 | 1.1e-15 | -0.73 | 0.05 | 0.95 | FALSE |
3 | GTEx | Brain Cerebellum | WFS1 | 0.44 | 0.26 | lasso | 10 | 0.27 | 9.8e-09 | -8.0 | 8.0 | 1.0e-15 | -0.73 | 0.06 | 0.94 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | WFS1 | 0.22 | 0.04 | enet | 25 | 0.08 | 2.6e-06 | -7.9 | 8.1 | 4.8e-16 | -0.77 | 0.04 | 0.95 | FALSE |
5 | GTEx | Muscle Skeletal | WFS1 | 0.13 | 0.11 | lasso | 5 | 0.09 | 3.9e-09 | -7.9 | 7.7 | 1.3e-14 | -0.67 | 0.34 | 0.66 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | WFS1 | 0.35 | 0.25 | lasso | 7 | 0.28 | 7.6e-16 | -7.9 | 7.7 | 1.4e-14 | -0.62 | 0.05 | 0.95 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | WFS1 | 0.29 | 0.29 | lasso | 3 | 0.29 | 2.6e-24 | -8.0 | 8.0 | 1.4e-15 | -0.73 | 0.18 | 0.82 | FALSE |
8 | GTEx | Testis | WFS1 | 0.38 | 0.05 | lasso | 7 | 0.01 | 7.0e-02 | -7.9 | 6.0 | 2.2e-09 | -0.29 | 0.22 | 0.38 | FALSE |
9 | GTEx | Thyroid | WFS1 | 0.19 | 0.12 | lasso | 4 | 0.10 | 2.9e-08 | -8.0 | 8.0 | 1.7e-15 | -0.73 | 0.16 | 0.84 | FALSE |
10 | METSIM | Adipose | WFS1 | 0.06 | 0.01 | enet | 14 | 0.02 | 1.5e-04 | -8.1 | 6.8 | 7.5e-12 | -0.72 | 0.02 | 0.97 | FALSE |
11 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | WFS1 | 0.07 | 0.10 | lasso | 3 | 0.10 | 2.6e-11 | -8.1 | 8.4 | 4.9e-17 | -0.73 | 0.04 | 0.96 | TRUE |
12 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | WFS1 | 0.04 | 0.00 | blup | 76 | 0.01 | 4.0e-02 | -2.8 | 6.8 | 1.0e-11 | -0.67 | 0.04 | 0.38 | FALSE |
13 | The Cancer Genome Atlas | Thyroid Carcinoma | WFS1 | 0.04 | 0.01 | blup | 76 | 0.01 | 1.6e-02 | -7.6 | 8.0 | 1.5e-15 | -0.78 | 0.04 | 0.93 | FALSE |