Best TWAS P=2.41e-10 · Best GWAS P=6.27e-16 conditioned to 1.6e-07
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Colon Adenocarcinoma | CEP120 | 0.06 | 0.02 | blup | 70 | 0.04 | 3.6e-03 | 4.8 | 6.3 | 2.4e-10 | -0.64 | 0.11 | 0.24 | TRUE |
| 2 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CEP120 | 0.03 | 0.02 | enet | 5 | 0.04 | 7.3e-05 | -2.2 | 5.2 | 1.7e-07 | -0.66 | 0.03 | 0.82 | FALSE |
| 3 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CEP120 | 0.10 | 0.14 | blup | 70 | 0.14 | 2.6e-14 | -7.4 | 5.9 | 4.1e-09 | -0.83 | 0.10 | 0.90 | FALSE |