Best TWAS P=6.51e-11 · Best GWAS P=1e-17 conditioned to 5.57e-11
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Cells Transformed fibroblasts | PTPRG | 0.22 | 0.00 | lasso | 7 | 0.01 | 3.9e-02 | -6.8 | 6.5 | 6.5e-11 | -0.39 | 0.11 | 0.21 | TRUE |
| 2 | ROSMAP | Brain Pre-frontal Cortex | CADPS | 0.09 | 0.08 | bslmm | 841 | 0.07 | 8.8e-10 | -5.7 | 6.0 | 1.6e-09 | 0.00 | 0.06 | 0.94 | TRUE |