TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood Platelet Count
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chr12:20,899,320-22,374,822
Best TWAS P=1.25e-12 · Best GWAS P=5.69e-11 conditioned to 2.26e-07
21M
21.2M
21.4M
21.6M
21.8M
22M
22.2M
22.4M
0
2
4
6
8
10
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
YFS
Blood
GOLT1B
0.21
0.14
enet
36
0.16
3.2e-49
4.6
7.1
1.2e-12
0.17
0.98
0.02
TRUE
2
GTEx
Heart Atrial Appendage
GOLT1B
0.16
0.15
lasso
6
0.13
2.9e-06
5.2
6.1
1.1e-09
0.04
0.50
0.07
TRUE
5
The Cancer Genome Atlas
Thyroid Carcinoma
C12orf39
0.05
0.01
blup
83
0.04
1.5e-04
4.4
5.8
4.9e-09
0.02
0.04
0.50
FALSE
3
NTR
Blood
C12orf39
0.03
0.02
lasso
3
0.01
2.7e-05
5.4
5.8
9.0e-09
-0.01
0.66
0.32
FALSE
1
GTEx
Brain Nucleus accumbens basal ganglia
PYROXD1
0.26
-0.01
enet
24
-0.01
4.7e-01
-2.8
-5.7
1.0e-08
-0.09
0.09
0.08
FALSE