Best TWAS P=7.37e-10 · Best GWAS P=2.55e-09 conditioned to 1
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Artery Tibial | CREB3L4 | 0.10 | 0.09 | lasso | 7 | 0.11 | 9.0e-09 | -3.8 | -5.3 | 1.1e-07 | 0.84 | 0.06 | 0.94 | FALSE |
2 | GTEx | Cells Transformed fibroblasts | CREB3L4 | 0.06 | 0.04 | lasso | 6 | 0.03 | 1.8e-03 | -4.8 | -5.6 | 1.9e-08 | 0.84 | 0.08 | 0.91 | FALSE |
3 | GTEx | Colon Transverse | RP11-422P24.10 | 0.09 | 0.12 | lasso | 8 | 0.08 | 1.1e-04 | -5.7 | 5.7 | 1.5e-08 | -0.97 | 0.03 | 0.96 | FALSE |
4 | GTEx | Muscle Skeletal | CREB3L4 | 0.03 | 0.05 | lasso | 3 | 0.04 | 1.4e-04 | -5.5 | -5.7 | 9.6e-09 | 0.96 | 0.04 | 0.96 | FALSE |
5 | GTEx | Muscle Skeletal | CRTC2 | 0.04 | 0.02 | lasso | 7 | 0.01 | 7.8e-02 | -5.4 | 5.6 | 2.7e-08 | -0.93 | 0.04 | 0.95 | FALSE |
6 | GTEx | Muscle Skeletal | RP11-422P24.10 | 0.03 | 0.02 | enet | 7 | 0.01 | 1.4e-02 | -5.8 | 5.7 | 1.3e-08 | -0.97 | 0.03 | 0.94 | FALSE |
7 | GTEx | Skin Not Sun Exposed Suprapubic | RP11-422P24.10 | 0.07 | 0.08 | lasso | 2 | 0.08 | 6.3e-05 | -6.0 | 5.8 | 6.5e-09 | -0.93 | 0.03 | 0.92 | FALSE |
8 | GTEx | Testis | RP11-422P24.10 | 0.12 | 0.02 | lasso | 2 | 0.03 | 2.5e-02 | -5.7 | 5.2 | 1.8e-07 | -0.91 | 0.04 | 0.80 | FALSE |
9 | GTEx | Thyroid | RP11-422P24.10 | 0.06 | 0.00 | lasso | 3 | 0.01 | 8.1e-02 | -5.8 | 5.5 | 4.3e-08 | -0.92 | 0.03 | 0.88 | FALSE |
10 | METSIM | Adipose | SLC39A1 | 0.05 | 0.02 | bslmm | 331 | 0.04 | 5.6e-07 | -5.9 | -5.8 | 9.1e-09 | 0.75 | 0.03 | 0.97 | FALSE |
11 | NTR | Blood | SLC39A1 | 0.02 | 0.02 | lasso | 3 | 0.02 | 5.8e-06 | -5.4 | -5.4 | 7.0e-08 | 0.97 | 0.04 | 0.96 | FALSE |
12 | YFS | Blood | CRTC2 | 0.01 | 0.00 | blup | 301 | 0.00 | 7.6e-02 | -5.8 | 5.3 | 1.3e-07 | -0.88 | 0.04 | 0.93 | FALSE |
13 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | CREB3L4 | 0.05 | 0.02 | blup | 33 | 0.03 | 2.4e-03 | -5.8 | -5.4 | 5.9e-08 | 0.91 | 0.03 | 0.79 | FALSE |
14 | The Cancer Genome Atlas | Breast Invasive Carcinoma | NUP210L | 0.02 | 0.02 | blup | 72 | 0.02 | 5.2e-05 | -5.4 | -5.7 | 1.0e-08 | 0.91 | 0.02 | 0.98 | FALSE |
15 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CREB3L4 | 0.08 | 0.07 | enet | 9 | 0.08 | 9.0e-10 | -5.7 | -5.7 | 1.2e-08 | 0.91 | 0.02 | 0.98 | FALSE |
16 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | CREB3L4 | 0.21 | 0.05 | lasso | 3 | 0.05 | 7.4e-04 | -4.3 | -5.2 | 2.4e-07 | 0.74 | 0.04 | 0.52 | FALSE |
17 | The Cancer Genome Atlas | Lung Adenocarcinoma | CREB3L4 | 0.08 | 0.04 | blup | 33 | 0.05 | 6.6e-07 | -4.4 | -5.8 | 5.6e-09 | 0.83 | 0.07 | 0.92 | FALSE |
18 | The Cancer Genome Atlas | Lung Adenocarcinoma | SLC39A1 | 0.02 | 0.02 | blup | 35 | 0.02 | 2.4e-03 | -5.8 | -6.0 | 1.7e-09 | 0.98 | 0.02 | 0.87 | FALSE |
19 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | NUP210L | 0.04 | 0.03 | enet | 15 | 0.06 | 1.3e-07 | -5.4 | -5.3 | 1.1e-07 | 0.67 | 0.06 | 0.90 | FALSE |
20 | The Cancer Genome Atlas | Prostate Adenocarcinoma | SLC39A1 | 0.02 | 0.02 | blup | 35 | 0.01 | 3.0e-02 | -5.9 | -6.2 | 7.4e-10 | 0.98 | 0.01 | 0.70 | TRUE |
21 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | DENND4B | 0.10 | 0.09 | enet | 2 | 0.04 | 2.8e-02 | -5.4 | -5.5 | 3.5e-08 | 0.97 | 0.01 | 0.63 | FALSE |
22 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | RAB13 | 0.13 | 0.08 | blup | 30 | 0.06 | 1.0e-02 | -5.4 | -6.1 | 1.2e-09 | 0.93 | 0.02 | 0.71 | FALSE |
23 | The Cancer Genome Atlas | Thyroid Carcinoma | CREB3L4 | 0.11 | 0.11 | lasso | 3 | 0.12 | 6.4e-12 | -4.4 | -5.5 | 4.8e-08 | 0.83 | 0.05 | 0.95 | FALSE |
24 | The Cancer Genome Atlas | Thyroid Carcinoma | NUP210L | 0.06 | 0.04 | blup | 71 | 0.05 | 1.5e-05 | -5.4 | -5.4 | 5.3e-08 | 0.88 | 0.05 | 0.93 | FALSE |