Best TWAS P=8.89e-15 · Best GWAS P=2.25e-10 conditioned to 0.187
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | DCAF16 | 0.21 | 0.15 | lasso | 3 | 0.17 | 5.1e-14 | 5.6 | 5.5 | 3.2e-08 | -0.21 | 0.37 | 0.63 | FALSE |
2 | GTEx | Adipose Visceral Omentum | DCAF16 | 0.19 | 0.06 | enet | 10 | 0.11 | 3.9e-06 | 5.6 | 6.0 | 1.9e-09 | -0.32 | 0.28 | 0.48 | FALSE |
3 | GTEx | Artery Aorta | DCAF16 | 0.10 | 0.01 | enet | 6 | 0.02 | 4.7e-02 | -5.9 | 7.0 | 1.8e-12 | -0.69 | 0.09 | 0.64 | FALSE |
4 | GTEx | Artery Tibial | DCAF16 | 0.16 | 0.16 | lasso | 5 | 0.13 | 1.5e-10 | 5.2 | 6.0 | 2.5e-09 | -0.31 | 0.34 | 0.66 | FALSE |
5 | GTEx | Breast Mammary Tissue | DCAF16 | 0.12 | 0.08 | lasso | 4 | 0.10 | 6.4e-06 | 5.7 | 6.9 | 5.9e-12 | -0.45 | 0.12 | 0.72 | FALSE |
6 | GTEx | Breast Mammary Tissue (Male) | DCAF16 | 0.24 | 0.03 | enet | 18 | -0.01 | 4.4e-01 | -5.7 | 7.8 | 8.9e-15 | -0.70 | 0.04 | 0.61 | TRUE |
7 | GTEx | Breast Mammary Tissue (Female) | DCAF16 | 0.16 | 0.13 | lasso | 2 | 0.06 | 7.8e-03 | 5.6 | 5.5 | 4.2e-08 | -0.24 | 0.06 | 0.17 | FALSE |
8 | GTEx | Esophagus Mucosa | DCAF16 | 0.10 | 0.02 | lasso | 4 | 0.02 | 8.3e-03 | 5.7 | 5.7 | 1.0e-08 | -0.32 | 0.10 | 0.52 | FALSE |
9 | GTEx | Esophagus Muscularis | DCAF16 | 0.16 | 0.14 | lasso | 3 | 0.14 | 9.3e-09 | 5.6 | 5.6 | 2.5e-08 | -0.23 | 0.33 | 0.66 | FALSE |
10 | GTEx | Nerve Tibial | DCAF16 | 0.16 | 0.14 | lasso | 3 | 0.14 | 2.8e-10 | 5.6 | 6.2 | 4.2e-10 | -0.32 | 0.36 | 0.64 | FALSE |
11 | GTEx | Skin Sun Exposed Lower leg | DCAF16 | 0.14 | 0.12 | enet | 14 | 0.12 | 5.4e-10 | 5.7 | 5.8 | 5.7e-09 | -0.25 | 0.31 | 0.69 | FALSE |
12 | GTEx | Spleen | DCAF16 | 0.35 | 0.02 | lasso | 5 | 0.11 | 8.5e-04 | 5.6 | 7.1 | 9.5e-13 | -0.66 | 0.05 | 0.58 | FALSE |
13 | GTEx | Stomach | DCAF16 | 0.21 | 0.04 | lasso | 6 | 0.02 | 5.6e-02 | 5.3 | 6.2 | 8.0e-10 | -0.23 | 0.08 | 0.57 | FALSE |
14 | GTEx | Thyroid | DCAF16 | 0.11 | 0.02 | lasso | 5 | 0.03 | 2.3e-03 | 5.6 | 6.9 | 4.7e-12 | -0.53 | 0.10 | 0.81 | FALSE |
15 | ROSMAP | Brain Pre-frontal Cortex | DCAF16 | 0.04 | 0.02 | bslmm | 379 | 0.01 | 3.9e-02 | -5.8 | 5.7 | 1.6e-08 | -0.79 | 0.04 | 0.86 | FALSE |
16 | YFS | Blood | DCAF16 | 0.02 | 0.02 | lasso | 1 | 0.01 | 1.1e-04 | 5.2 | 5.2 | 1.6e-07 | -0.22 | 0.28 | 0.68 | FALSE |
17 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | NCAPG | 0.14 | 0.07 | lasso | 3 | 0.07 | 5.2e-08 | -5.8 | -5.6 | 2.3e-08 | 0.72 | 0.10 | 0.90 | FALSE |
18 | The Cancer Genome Atlas | Brain Lower Grade Glioma | DCAF16 | 0.09 | 0.02 | lasso | 3 | 0.04 | 5.2e-05 | 5.2 | 6.9 | 4.3e-12 | -0.55 | 0.15 | 0.62 | FALSE |
19 | The Cancer Genome Atlas | Brain Lower Grade Glioma | NCAPG | 0.02 | 0.03 | lasso | 1 | 0.02 | 9.0e-04 | -5.8 | -5.8 | 5.2e-09 | 0.76 | 0.02 | 0.70 | FALSE |
20 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DCAF16 | 0.04 | 0.04 | blup | 31 | 0.04 | 2.2e-05 | 5.6 | 7.2 | 6.3e-13 | -0.60 | 0.14 | 0.61 | FALSE |
21 | The Cancer Genome Atlas | Prostate Adenocarcinoma | NCAPG | 0.02 | 0.02 | blup | 34 | 0.02 | 3.4e-03 | -6.2 | -5.4 | 6.7e-08 | 0.86 | 0.01 | 0.80 | FALSE |
22 | The Cancer Genome Atlas | Thyroid Carcinoma | DCAF16 | 0.07 | 0.04 | blup | 31 | 0.07 | 4.9e-07 | 5.3 | 6.6 | 3.5e-11 | -0.55 | 0.24 | 0.64 | FALSE |