Best TWAS P=3.84e-15 · Best GWAS P=6.79e-43 conditioned to NaN
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | DPYSL4 | 0.09 | 0.03 | enet | 16 | 0.05 | 9.9e-07 | 4.7 | 5.2 | 1.9e-07 | -0.02 | 1.00 | 0.00 | TRUE |
2 | GTEx | Adipose Subcutaneous | STK32C | 0.19 | 0.10 | lasso | 7 | 0.14 | 3.0e-11 | 4.8 | -5.4 | 7.5e-08 | -0.16 | 1.00 | 0.00 | TRUE |
3 | GTEx | Artery Aorta | STK32C | 0.22 | 0.16 | lasso | 5 | 0.20 | 3.3e-11 | 4.8 | -5.5 | 4.1e-08 | -0.13 | 1.00 | 0.00 | FALSE |
4 | GTEx | Artery Tibial | INPP5A | 0.15 | 0.06 | lasso | 7 | 0.05 | 1.0e-04 | -6.9 | -6.3 | 2.8e-10 | -0.11 | 0.52 | 0.02 | TRUE |
5 | GTEx | Cells Transformed fibroblasts | DPYSL4 | 0.53 | 0.39 | enet | 14 | 0.58 | 1.1e-52 | 4.7 | 5.3 | 1.4e-07 | 0.03 | 1.00 | 0.00 | FALSE |
6 | GTEx | Cells Transformed fibroblasts | STK32C | 0.12 | 0.08 | enet | 17 | 0.07 | 4.5e-06 | 4.6 | -5.6 | 1.8e-08 | -0.13 | 0.96 | 0.00 | FALSE |
7 | GTEx | Colon Transverse | STK32C | 0.14 | -0.01 | lasso | 6 | 0.00 | 6.7e-01 | 4.8 | -7.2 | 4.1e-13 | -0.32 | 0.04 | 0.81 | TRUE |
8 | GTEx | Esophagus Mucosa | DPYSL4 | 0.42 | 0.21 | enet | 30 | 0.36 | 1.2e-24 | 4.7 | 5.8 | 5.7e-09 | 0.10 | 1.00 | 0.00 | FALSE |
9 | GTEx | Esophagus Mucosa | STK32C | 0.15 | 0.05 | lasso | 5 | 0.05 | 4.6e-04 | 5.6 | -5.2 | 1.8e-07 | -0.14 | 0.82 | 0.07 | FALSE |
10 | GTEx | Lung | DPYSL4 | 0.42 | 0.23 | enet | 14 | 0.41 | 6.9e-34 | 4.6 | 5.2 | 2.4e-07 | 0.09 | 1.00 | 0.00 | FALSE |
11 | GTEx | Nerve Tibial | STK32C | 0.38 | 0.14 | lasso | 10 | 0.26 | 7.6e-19 | 4.5 | -5.4 | 7.8e-08 | -0.17 | 1.00 | 0.00 | FALSE |
12 | GTEx | Pituitary | DPYSL4 | 0.24 | 0.11 | lasso | 4 | 0.26 | 3.0e-07 | 2.3 | 5.4 | 7.8e-08 | 0.14 | 0.10 | 0.05 | TRUE |
13 | GTEx | Prostate | DPYSL4 | 0.41 | 0.08 | lasso | 7 | 0.13 | 3.4e-04 | 5.4 | 5.4 | 5.7e-08 | 0.06 | 0.14 | 0.14 | FALSE |
14 | GTEx | Prostate | STK32C | 0.43 | 0.11 | lasso | 9 | 0.09 | 2.5e-03 | 5.6 | -5.8 | 8.5e-09 | -0.14 | 0.10 | 0.05 | FALSE |
15 | GTEx | Skin Sun Exposed Lower leg | STK32C | 0.10 | 0.02 | lasso | 5 | 0.02 | 4.0e-03 | 5.9 | -6.3 | 3.3e-10 | -0.17 | 0.44 | 0.02 | FALSE |
16 | GTEx | Spleen | STK32C | 0.37 | 0.12 | lasso | 10 | 0.18 | 1.7e-05 | 4.9 | -5.9 | 2.9e-09 | -0.18 | 0.35 | 0.05 | FALSE |
17 | GTEx | Thyroid | STK32C | 0.17 | 0.07 | lasso | 8 | 0.06 | 2.7e-05 | 4.8 | -6.4 | 1.5e-10 | -0.14 | 0.89 | 0.01 | FALSE |
18 | GTEx | Whole Blood | DPYSL4 | 0.35 | 0.08 | enet | 34 | 0.19 | 3.9e-17 | 2.9 | 5.5 | 3.9e-08 | 0.08 | 1.00 | 0.00 | FALSE |
19 | ROSMAP | Brain Pre-frontal Cortex | DPYSL4 | 0.18 | 0.17 | enet | 13 | 0.18 | 6.4e-23 | 4.8 | 5.5 | 5.2e-08 | 0.04 | 1.00 | 0.00 | FALSE |
20 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | DPYSL4 | 0.28 | 0.22 | enet | 19 | 0.25 | 3.0e-21 | -4.4 | 6.3 | 2.6e-10 | 0.02 | 0.21 | 0.75 | TRUE |
21 | The Cancer Genome Atlas | Bladder Urothelial Carcinoma | STK32C | 0.06 | 0.06 | lasso | 1 | 0.04 | 2.3e-04 | 5.6 | -5.6 | 2.6e-08 | -0.13 | 0.08 | 0.83 | FALSE |
22 | The Cancer Genome Atlas | Breast Invasive Carcinoma | DPYSL4 | 0.19 | 0.30 | enet | 19 | 0.37 | 3.1e-79 | 4.6 | 5.5 | 2.9e-08 | 0.07 | 0.11 | 0.88 | FALSE |
23 | The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | DPYSL4 | 0.31 | 0.19 | lasso | 10 | 0.18 | 3.4e-09 | 4.6 | 5.6 | 2.2e-08 | 0.02 | 0.08 | 0.91 | FALSE |
24 | The Cancer Genome Atlas | Colon Adenocarcinoma | DPYSL4 | 0.48 | 0.27 | enet | 20 | 0.39 | 4.5e-24 | 4.6 | 5.9 | 3.2e-09 | 0.06 | 0.07 | 0.92 | FALSE |
25 | The Cancer Genome Atlas | Esophageal Carcinoma | DPYSL4 | 0.21 | 0.07 | blup | 60 | 0.09 | 8.2e-04 | -4.0 | 5.9 | 3.5e-09 | 0.11 | 0.03 | 0.86 | FALSE |
26 | The Cancer Genome Atlas | Glioblastoma Multiforme | STK32C | 0.13 | -0.01 | blup | 107 | 0.08 | 1.6e-03 | 3.6 | -6.4 | 1.4e-10 | -0.16 | 0.03 | 0.39 | FALSE |
27 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | DPYSL4 | 0.16 | 0.24 | blup | 60 | 0.27 | 7.6e-31 | -4.0 | 5.8 | 7.8e-09 | 0.05 | 0.21 | 0.75 | FALSE |
28 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | DPYSL4 | 0.16 | 0.21 | enet | 16 | 0.24 | 7.1e-27 | 4.6 | 5.7 | 9.3e-09 | 0.08 | 0.07 | 0.91 | FALSE |
29 | The Cancer Genome Atlas | Lung Adenocarcinoma | DPYSL4 | 0.17 | 0.16 | enet | 18 | 0.23 | 1.5e-26 | 4.8 | 5.5 | 2.8e-08 | 0.07 | 0.06 | 0.92 | FALSE |
30 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | DPYSL4 | 0.11 | 0.07 | blup | 60 | 0.13 | 1.0e-14 | 4.6 | 5.7 | 1.5e-08 | 0.06 | 0.02 | 0.97 | FALSE |
31 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | DPYSL4 | 0.24 | 0.21 | lasso | 7 | 0.28 | 2.5e-19 | 4.6 | 5.5 | 3.9e-08 | 0.08 | 0.01 | 0.99 | FALSE |
32 | The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | LRRC27 | 0.11 | 0.02 | enet | 17 | 0.04 | 1.4e-03 | 5.7 | -5.4 | 7.8e-08 | -0.16 | 0.03 | 0.47 | TRUE |
33 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | DPYSL4 | 0.29 | 0.17 | blup | 60 | 0.35 | 2.2e-15 | 4.7 | 6.2 | 4.9e-10 | 0.06 | 0.02 | 0.97 | FALSE |
34 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | STK32C | 0.10 | 0.01 | enet | 9 | 0.08 | 3.4e-04 | 5.6 | -5.7 | 1.5e-08 | -0.19 | 0.04 | 0.58 | TRUE |
35 | The Cancer Genome Atlas | Prostate Adenocarcinoma | DPYSL4 | 0.34 | 0.37 | enet | 15 | 0.46 | 2.2e-53 | -4.3 | 5.5 | 3.5e-08 | 0.06 | 0.15 | 0.82 | FALSE |
36 | The Cancer Genome Atlas | Prostate Adenocarcinoma | PWWP2B | 0.05 | 0.01 | blup | 47 | 0.01 | 5.2e-02 | -2.3 | -7.9 | 3.8e-15 | -0.04 | 0.02 | 0.12 | TRUE |
37 | The Cancer Genome Atlas | Rectum Adenocarcinoma | DPYSL4 | 0.34 | 0.03 | enet | 16 | 0.21 | 1.2e-05 | 4.6 | 7.0 | 3.4e-12 | 0.07 | 0.02 | 0.55 | TRUE |
38 | The Cancer Genome Atlas | Soft Tissue Sarcoma | DPYSL4 | 0.14 | 0.12 | lasso | 7 | 0.13 | 2.5e-08 | 5.2 | 5.4 | 7.0e-08 | 0.07 | 0.01 | 0.99 | FALSE |
39 | The Cancer Genome Atlas | Skin Cutaneous Melanoma | DPYSL4 | 0.27 | 0.07 | blup | 64 | 0.07 | 7.1e-03 | 4.6 | 5.9 | 3.8e-09 | 0.02 | 0.02 | 0.52 | FALSE |
40 | The Cancer Genome Atlas | Stomach Adenocarcinoma | DPYSL4 | 0.23 | 0.06 | lasso | 11 | 0.24 | 3.7e-17 | 2.9 | 5.2 | 2.3e-07 | 0.09 | 0.05 | 0.94 | FALSE |
41 | The Cancer Genome Atlas | Testicular Germ Cell Tumors | DPYSL4 | 0.17 | 0.12 | blup | 64 | 0.11 | 1.3e-04 | -4.0 | 5.6 | 2.2e-08 | 0.04 | 0.08 | 0.78 | FALSE |
42 | The Cancer Genome Atlas | Thyroid Carcinoma | DPYSL4 | 0.30 | 0.24 | enet | 15 | 0.38 | 1.7e-38 | 2.9 | 5.2 | 2.2e-07 | 0.10 | 0.19 | 0.78 | FALSE |