Best TWAS P=5.39e-08 · Best GWAS P=1.67e-08 conditioned to 0.0194
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | SEC24D | 0.06 | 0.00 | blup | 86 | 0.02 | 3.1e-03 | -3.1 | -5.4 | 5.4e-08 | 0.76 | 0.01 | 0.95 | TRUE |
| 2 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | SEC24D | 0.06 | 0.02 | enet | 9 | 0.03 | 8.9e-05 | -5.4 | -5.3 | 9.9e-08 | 0.75 | 0.01 | 0.99 | FALSE |