TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood Red Count
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chr7:6,502,367-6,965,895
Best TWAS P=5.14e-08 · Best GWAS P=1.79e-08 conditioned to 0.106
6.5M
6.6M
6.7M
6.8M
6.9M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
The Cancer Genome Atlas
Brain Lower Grade Glioma
PMS2CL
0.10
0.12
blup
22
0.12
4.6e-14
5.6
-5.5
5.1e-08
-0.91
0
1.00
TRUE
3
The Cancer Genome Atlas
Thyroid Carcinoma
PMS2CL
0.08
0.12
lasso
5
0.11
1.0e-10
5.3
-5.3
9.2e-08
-0.90
0
0.99
FALSE
2
The Cancer Genome Atlas
Testicular Germ Cell Tumors
PMS2CL
0.14
0.10
lasso
2
0.07
1.5e-03
5.3
-5.3
1.2e-07
-0.90
0
0.86
FALSE