TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Blood Red Count
:
←
→
chr16:19,937,475-21,352,507
Best TWAS P=9.62e-08 · Best GWAS P=6.45e-09 conditioned to 0.00656
20M
20.2M
20.4M
20.6M
20.8M
21M
21.2M
21.4M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
The Cancer Genome Atlas
Brain Lower Grade Glioma
ACSM1
0.11
0.06
lasso
4
0.05
1.9e-06
-5.1
-5.3
9.6e-08
0.75
0.09
0.91
TRUE
2
ROSMAP
Brain Pre-frontal Cortex
ACSM1
0.07
0.06
lasso
8
0.06
1.0e-07
-5.2
-5.2
2.0e-07
0.75
0.07
0.93
FALSE
1
GTEx
Skin Sun Exposed Lower leg
THUMPD1
0.06
0.01
enet
18
0.00
4.5e-01
-5.7
5.2
2.7e-07
-0.57
0.04
0.78
FALSE