TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Comparative height size at age 10
:
←
→
chr21:38,835,811-40,373,763
Best TWAS P=2.18e-10 · Best GWAS P=1.68e-17 conditioned to 9.8e-09
38.8M
39M
39.2M
39.4M
39.6M
39.8M
40M
40.2M
40.4M
0
5
10
15
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
METSIM
Adipose
KCNJ15
0.05
0.03
lasso
5
0.02
6.8e-04
-6.0
6.3
2.2e-10
-0.67
0.62
0.33
TRUE
3
YFS
Blood
KCNJ15
0.22
0.29
enet
19
0.30
3.9e-100
-6.0
6.1
1.1e-09
-0.69
1.00
0.00
FALSE
4
The Cancer Genome Atlas
Testicular Germ Cell Tumors
DSCR10
0.07
0.03
blup
35
0.06
3.0e-03
5.1
-6.1
1.3e-09
0.71
0.02
0.67
FALSE
2
NTR
Blood
KCNJ15
0.06
0.09
lasso
4
0.09
7.0e-27
-5.8
5.9
4.2e-09
-0.68
1.00
0.00
FALSE