TWAS
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Traits
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Traits
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Comparative height size at age 10
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chr22:21,798,199-22,960,419
Best TWAS P=1.08e-07 · Best GWAS P=2.53e-08 conditioned to 0.0912
21.8M
22M
22.2M
22.4M
22.6M
22.8M
23M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Brain Cerebellum
CCDC116
0.25
0.16
lasso
4
0.10
6.5e-04
-4.8
5.3
1.1e-07
-0.26
0.26
0.51
TRUE
2
GTEx
Brain Nucleus accumbens basal ganglia
LL22NC03-86G7.1
0.61
0.50
enet
32
0.56
7.3e-18
4.3
-5.2
2.1e-07
0.92
0.02
0.97
TRUE
3
METSIM
Adipose
YDJC
0.05
0.04
enet
11
0.04
7.7e-07
-4.7
-5.3
1.1e-07
0.37
0.41
0.57
FALSE
4
The Cancer Genome Atlas
Bladder Urothelial Carcinoma
CCDC116
0.03
0.02
enet
12
0.02
5.1e-03
-4.6
5.2
2.3e-07
-0.26
0.01
0.63
FALSE
5
The Cancer Genome Atlas
Glioblastoma Multiforme
CCDC116
0.10
0.06
blup
39
0.07
4.4e-03
-4.6
5.1
2.9e-07
-0.21
0.01
0.73
FALSE