Best TWAS P=9.47e-12 · Best GWAS P=6.92e-13 conditioned to 0.00471
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | WFS1 | 0.10 | 0.03 | lasso | 2 | 0.02 | 4.8e-04 | -6.9 | 6.6 | 3.8e-11 | -0.86 | 0.02 | 0.97 | FALSE |
2 | GTEx | Brain Cerebellar Hemisphere | WFS1 | 0.72 | 0.49 | lasso | 13 | 0.47 | 1.3e-13 | -6.2 | 6.4 | 1.2e-10 | -0.87 | 0.05 | 0.95 | FALSE |
3 | GTEx | Brain Cerebellum | WFS1 | 0.44 | 0.26 | lasso | 10 | 0.27 | 9.8e-09 | -6.2 | 6.3 | 3.2e-10 | -0.86 | 0.04 | 0.96 | FALSE |
4 | GTEx | Cells Transformed fibroblasts | WFS1 | 0.22 | 0.04 | enet | 25 | 0.08 | 2.6e-06 | -6.5 | 6.8 | 9.5e-12 | -0.81 | 0.05 | 0.94 | TRUE |
5 | GTEx | Muscle Skeletal | WFS1 | 0.13 | 0.11 | lasso | 5 | 0.09 | 3.9e-09 | -6.5 | 6.5 | 1.1e-10 | -0.85 | 0.22 | 0.78 | FALSE |
6 | GTEx | Skin Not Sun Exposed Suprapubic | WFS1 | 0.35 | 0.25 | lasso | 7 | 0.28 | 7.6e-16 | -6.5 | 6.2 | 6.5e-10 | -0.80 | 0.10 | 0.90 | FALSE |
7 | GTEx | Skin Sun Exposed Lower leg | WFS1 | 0.29 | 0.29 | lasso | 3 | 0.29 | 2.6e-24 | -6.2 | 6.0 | 1.8e-09 | -0.87 | 0.44 | 0.56 | FALSE |
8 | GTEx | Thyroid | WFS1 | 0.19 | 0.12 | lasso | 4 | 0.10 | 2.9e-08 | -6.2 | 6.0 | 1.4e-09 | -0.87 | 0.20 | 0.80 | FALSE |
9 | METSIM | Adipose | WFS1 | 0.06 | 0.01 | enet | 14 | 0.02 | 1.5e-04 | -7.0 | 6.4 | 1.9e-10 | -0.72 | 0.02 | 0.96 | FALSE |
10 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | WFS1 | 0.07 | 0.10 | lasso | 3 | 0.10 | 2.6e-11 | -6.8 | 6.8 | 1.3e-11 | -0.86 | 0.04 | 0.96 | FALSE |
11 | The Cancer Genome Atlas | Thyroid Carcinoma | WFS1 | 0.04 | 0.01 | blup | 76 | 0.01 | 1.6e-02 | -6.2 | 6.2 | 5.7e-10 | -0.84 | 0.02 | 0.96 | FALSE |