Best TWAS P=1.97e-12 · Best GWAS P=2.61e-11 conditioned to 0.164
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | TTLL5 | 0.13 | 0.15 | lasso | 10 | 0.19 | 1.2e-22 | 5.3 | -6.4 | 2.1e-10 | -0.82 | 0.72 | 0.28 | FALSE |
2 | GTEx | Adipose Subcutaneous | TTLL5 | 0.13 | 0.10 | lasso | 4 | 0.11 | 2.2e-09 | 5.4 | -5.9 | 3.8e-09 | -0.73 | 0.52 | 0.48 | FALSE |
3 | GTEx | Artery Aorta | TTLL5 | 0.09 | 0.11 | lasso | 3 | 0.07 | 1.1e-04 | 5.8 | -6.0 | 2.7e-09 | -0.62 | 0.47 | 0.40 | FALSE |
4 | GTEx | Artery Tibial | TTLL5 | 0.09 | 0.05 | lasso | 4 | 0.05 | 1.3e-04 | 5.0 | -5.4 | 8.3e-08 | -0.70 | 0.69 | 0.21 | FALSE |
5 | GTEx | Brain Cerebellar Hemisphere | TTLL5 | 0.19 | 0.06 | lasso | 2 | 0.02 | 9.7e-02 | 5.7 | -5.8 | 6.3e-09 | -0.48 | 0.10 | 0.35 | FALSE |
6 | GTEx | Brain Cortex | TTLL5 | 0.23 | 0.09 | lasso | 13 | 0.07 | 5.9e-03 | 6.6 | -7.0 | 2.5e-12 | -0.91 | 0.04 | 0.85 | FALSE |
7 | GTEx | Cells Transformed fibroblasts | TTLL5 | 0.09 | 0.09 | lasso | 6 | 0.11 | 1.6e-08 | 5.3 | -5.7 | 1.0e-08 | -0.82 | 0.52 | 0.48 | FALSE |
8 | GTEx | Cells Transformed fibroblasts | FLVCR2 | 0.21 | 0.16 | lasso | 8 | 0.17 | 1.2e-12 | 6.3 | 6.2 | 6.3e-10 | 0.89 | 0.06 | 0.94 | FALSE |
9 | GTEx | Cells Transformed fibroblasts | AC007182.6 | 0.18 | 0.20 | lasso | 7 | 0.18 | 2.1e-13 | 6.3 | 6.3 | 3.1e-10 | 0.89 | 0.08 | 0.92 | FALSE |
10 | GTEx | Esophagus Gastroesophageal Junction | TTLL5 | 0.16 | 0.03 | lasso | 3 | 0.01 | 1.2e-01 | 5.2 | -5.3 | 1.2e-07 | -0.75 | 0.13 | 0.63 | FALSE |
11 | GTEx | Esophagus Mucosa | TTLL5 | 0.11 | 0.00 | lasso | 5 | 0.00 | 2.4e-01 | 5.1 | -5.5 | 4.5e-08 | -0.74 | 0.22 | 0.43 | FALSE |
12 | GTEx | Lung | TTLL5 | 0.15 | 0.08 | enet | 17 | 0.11 | 9.0e-09 | 5.4 | -5.9 | 4.8e-09 | -0.74 | 0.72 | 0.28 | FALSE |
13 | METSIM | Adipose | TTLL5 | 0.12 | 0.01 | blup | 624 | 0.05 | 2.1e-07 | 4.8 | -5.4 | 5.7e-08 | -0.53 | 0.36 | 0.37 | FALSE |
14 | YFS | Blood | TTLL5 | 0.04 | 0.04 | lasso | 6 | 0.03 | 1.4e-10 | 4.4 | -5.5 | 2.9e-08 | -0.54 | 0.99 | 0.01 | FALSE |
15 | The Cancer Genome Atlas | Breast Invasive Carcinoma | TTLL5 | 0.01 | 0.02 | enet | 7 | 0.02 | 3.6e-05 | 5.8 | -7.0 | 3.2e-12 | -0.80 | 0.04 | 0.87 | FALSE |
16 | The Cancer Genome Atlas | Colon Adenocarcinoma | TTLL5 | 0.07 | 0.04 | blup | 121 | 0.06 | 2.4e-04 | 6.6 | -6.4 | 2.1e-10 | -0.92 | 0.03 | 0.96 | FALSE |
17 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | TTLL5 | 0.04 | 0.02 | blup | 121 | 0.04 | 1.1e-05 | 5.9 | -6.3 | 2.7e-10 | -0.79 | 0.24 | 0.75 | FALSE |
18 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | TTLL5 | 0.04 | 0.03 | blup | 121 | 0.04 | 2.8e-05 | 5.0 | -5.9 | 3.5e-09 | -0.73 | 0.69 | 0.24 | FALSE |
19 | The Cancer Genome Atlas | Lung Adenocarcinoma | TTLL5 | 0.03 | 0.01 | blup | 122 | 0.02 | 3.2e-03 | 5.7 | -7.0 | 2.0e-12 | -0.84 | 0.05 | 0.88 | TRUE |
20 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | TTLL5 | 0.02 | 0.01 | blup | 121 | 0.02 | 2.5e-03 | 5.7 | -6.9 | 4.4e-12 | -0.86 | 0.05 | 0.58 | FALSE |
21 | The Cancer Genome Atlas | Prostate Adenocarcinoma | TTLL5 | 0.03 | 0.03 | lasso | 3 | 0.02 | 1.6e-03 | 4.9 | -5.2 | 2.4e-07 | -0.62 | 0.06 | 0.69 | FALSE |
22 | The Cancer Genome Atlas | Thyroid Carcinoma | TTLL5 | 0.06 | 0.05 | blup | 121 | 0.05 | 6.3e-06 | 4.7 | -6.0 | 1.8e-09 | -0.79 | 0.92 | 0.08 | FALSE |