Best TWAS P=1.21e-07 · Best GWAS P=9.14e-09 conditioned to 0.00634
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Testis | DMPK | 0.19 | 0.11 | lasso | 4 | 0.07 | 0.00032 | 4.8 | 5.2 | 1.5e-07 | -0.64 | 0.06 | 0.90 | FALSE |
2 | The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | RSPH6A | 0.07 | 0.06 | blup | 50 | 0.05 | 0.00049 | 4.8 | -5.3 | 1.2e-07 | 0.74 | 0.05 | 0.84 | TRUE |