Best TWAS P=2e-07 · Best GWAS P=2.94e-06 conditioned to 0.524
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CCDC66 | 0.05 | 0.05 | blup | 56 | 0.06 | 1.0e-07 | -3.8 | -5.2 | 2.6e-07 | 0.83 | 0.06 | 0.88 | FALSE |
| 2 | The Cancer Genome Atlas | Lung Adenocarcinoma | CCDC66 | 0.05 | 0.06 | blup | 56 | 0.05 | 9.7e-07 | -3.8 | -5.2 | 2.0e-07 | 0.83 | 0.08 | 0.84 | TRUE |