743 significantly associated models · 174 unique genes
.
# | chr | p0 | p1 | # assoc genes | # joint genes | best TWAS P | best SNP P | cond SNP P | % var exp | joint genes |
---|---|---|---|---|---|---|---|---|---|---|
1 | 1 | 16273995 | 18074702 | 8 | 1 | 1.3e-12 | 8.8e-12 | 1.1e-01 | 94 | MST1P9 |
2 | 1 | 40748755 | 42406344 | 2 | 1 | 5.5e-12 | 2.3e-11 | 7.3e-03 | 84 | SCMH1 |
3 | 1 | 50735395 | 52135979 | 1 | 1 | 5.1e-09 | 9.1e-10 | 2.7e-02 | 87 | CDKN2C |
4 | 1 | 149672809 | 150515021 | 3 | 1 | 1.6e-09 | 6.2e-16 | 6.5e-08 | 55 | RP11-196G18.22 |
5 | 1 | 183325796 | 184739300 | 1 | 1 | 5.1e-16 | 7.2e-16 | 6.8e-02 | 95 | TSEN15 |
6 | 2 | 24348096 | 25837917 | 2 | 1 | 7.9e-09 | 2.1e-10 | 6.5e-06 | 50 | ADCY3 |
7 | 2 | 55401562 | 56843605 | 1 | 1 | 9.3e-11 | 1.8e-13 | 2.3e-04 | 75 | EFEMP1 |
8 | 2 | 168949234 | 170419444 | 2 | 1 | 1.2e-12 | 6.4e-11 | 1.6e-03 | 77 | NOSTRIN |
9 | 2 | 218827778 | 220226393 | 1 | 1 | 5.4e-08 | 5.1e-06 | 1.1e-01 | 87 | BCS1L |
10 | 2 | 231913056 | 233446568 | 3 | 2 | 2.6e-10 | 3.0e-08 | 7.0e-01 | 100 | DIS3L2 PDE6D |
11 | 3 | 49615624 | 50998816 | 1 | 1 | 9.3e-08 | 2.5e-07 | 6.8e-01 | 99 | SEMA3B-AS1 |
12 | 3 | 56341514 | 56902096 | 1 | 1 | 2.0e-07 | 2.9e-06 | 5.2e-01 | 98 | CCDC66 |
13 | 3 | 128788778 | 129284415 | 1 | 1 | 1.4e-07 | 1.3e-06 | 4.8e-02 | 83 | H1FX |
14 | 3 | 140350567 | 141867638 | 1 | 1 | 5.1e-30 | 6.1e-30 | 1.0e+00 | 100 | ZBTB38 |
15 | 4 | 17104059 | 18507692 | 2 | 1 | 8.2e-27 | 6.6e-28 | 1.0e-05 | 84 | DCAF16 |
16 | 4 | 145203531 | 146788825 | 2 | 2 | 9.4e-13 | 7.0e-23 | 4.8e-12 | 51 | ANAPC10 OTUD4 |
17 | 5 | 130830617 | 132693330 | 8 | 1 | 5.3e-12 | 3.0e-09 | 1.0e+00 | 100 | P4HA2 |
18 | 5 | 176040488 | 177260129 | 1 | 1 | 1.0e-12 | 3.4e-12 | 7.2e-03 | 85 | RAB24 |
19 | 5 | 178968049 | 180374523 | 1 | 1 | 4.1e-08 | 8.4e-10 | 1.9e-03 | 74 | MAPK9 |
20 | 6 | 7481928 | 8118906 | 1 | 1 | 3.3e-08 | 9.5e-13 | 4.0e-07 | 50 | BMP6 |
21 | 6 | 33745071 | 36158878 | 9 | 7 | 3.2e-17 | 1.5e-19 | NaN | NaN | C6orf106 RPL10A ZNF76 |
22 | 6 | 104478130 | 106230491 | 2 | 1 | 1.0e-10 | 1.2e-17 | 2.0e-08 | 57 | LIN28B |
23 | 6 | 125970401 | 127355237 | 1 | 1 | 8.9e-11 | 4.7e-12 | 1.6e-02 | 88 | CENPW |
24 | 6 | 129638583 | 131163098 | 2 | 1 | 2.4e-17 | 7.0e-16 | 1.0e+00 | 100 | RP11-73O6.3 |
25 | 6 | 141924760 | 143855272 | 2 | 1 | 4.7e-17 | 1.8e-18 | 1.0e+00 | 100 | GPR126 |
26 | 7 | 2032803 | 5003373 | 3 | 2 | 2.1e-15 | 2.5e-15 | 1.0e+00 | 100 | GNA12 SDK1 |
27 | 7 | 23296533 | 23818538 | 1 | 1 | 1.2e-08 | 3.3e-09 | 1.2e-02 | 82 | TRA2A |
28 | 7 | 27623776 | 28468319 | 1 | 1 | 1.8e-10 | 2.1e-15 | 2.3e-06 | 64 | JAZF1 |
29 | 7 | 91492103 | 93160671 | 2 | 1 | 4.2e-12 | 3.6e-14 | 8.4e-05 | 73 | CDK6 |
30 | 8 | 130517157 | 131045893 | 1 | 1 | 3.8e-10 | 1.2e-10 | 7.7e-02 | 92 | GSDMC |
31 | 9 | 97573117 | 98969746 | 2 | 1 | 1.2e-09 | 1.2e-14 | 1.6e-11 | 24 | RP11-435O5.5 |
32 | 9 | 138628816 | 140071683 | 2 | 1 | 4.0e-08 | 1.4e-07 | 8.1e-01 | 100 | SEC16A |
33 | 10 | 4334578 | 5844628 | 2 | 1 | 2.8e-09 | 7.2e-08 | 1.0e+00 | 100 | AKR1C3 |
34 | 10 | 103527782 | 105275242 | 7 | 1 | 6.4e-11 | 2.7e-08 | 2.8e-01 | 96 | TMEM180 |
35 | 11 | 66468469 | 67856510 | 1 | 1 | 2.3e-17 | 3.0e-17 | 1.0e+00 | 100 | RAD9A |
36 | 12 | 191619 | 1190134 | 1 | 1 | 1.8e-07 | 1.5e-07 | 9.6e-04 | 60 | KDM5A |
37 | 12 | 27587038 | 29432481 | 2 | 1 | 6.0e-13 | 1.4e-13 | 2.0e-02 | 90 | CCDC91 |
38 | 12 | 55677395 | 57452308 | 7 | 1 | 1.9e-08 | 1.2e-07 | 9.8e-01 | 100 | IL23A |
39 | 13 | 49557805 | 51390447 | 2 | 2 | 2.2e-07 | 1.3e-12 | 2.8e-10 | 21 | DLEU2 EBPL |
40 | 14 | 91831899 | 93223990 | 1 | 1 | 1.1e-07 | 1.7e-07 | 1.0e+00 | 100 | RP11-529H20.5 |
41 | 15 | 73524629 | 74915888 | 1 | 1 | 1.6e-07 | 2.6e-06 | 2.4e-04 | 39 | LOXL1-AS1 |
42 | 15 | 84151637 | 85895721 | 11 | 1 | 7.6e-14 | 2.4e-15 | 1.0e-06 | 62 | AC103965.1 |
43 | 15 | 89192873 | 89701439 | 1 | 1 | 2.1e-08 | 2.8e-12 | 2.1e-12 | -1 | MFGE8 |
44 | 15 | 99816860 | 101209341 | 1 | 1 | 1.5e-08 | 5.7e-10 | 7.1e-08 | 24 | CTD-3076O17.1 |
45 | 16 | 1994980 | 2502641 | 2 | 1 | 4.1e-08 | 1.0e-06 | 2.8e-01 | 95 | CASKIN1 |
46 | 16 | 89825065 | 90172696 | 1 | 1 | 9.4e-08 | 1.1e-05 | 1.8e-01 | 91 | DBNDD1 |
47 | 17 | 6652789 | 8112253 | 3 | 1 | 3.4e-08 | 5.1e-08 | 1.8e-01 | 94 | CHRNB1 |
48 | 17 | 17484654 | 18914778 | 1 | 1 | 1.9e-07 | 6.0e-07 | 6.3e-01 | 99 | TOP3A |
49 | 17 | 28398977 | 30034689 | 3 | 2 | 2.4e-11 | 4.2e-18 | 3.2e-06 | 71 | CRLF3 RP11-848P1.7 |
50 | 17 | 59245274 | 59736794 | 1 | 1 | 5.6e-08 | 4.6e-09 | 2.5e-02 | 85 | C17orf82 |
51 | 17 | 60916262 | 62694738 | 9 | 2 | 9.8e-13 | 9.8e-12 | 2.1e-01 | 97 | DDX42 SCN4A |
52 | 18 | 20082830 | 21806700 | 3 | 1 | 1.3e-10 | 2.2e-24 | 1.5e-16 | 34 | RIOK3 |
53 | 18 | 45873080 | 47686517 | 1 | 1 | 1.0e-07 | 3.1e-07 | 8.7e-02 | 89 | DYM |
54 | 19 | 1916392 | 2466607 | 1 | 1 | 5.1e-08 | 3.1e-09 | 1.0e+00 | 100 | DOT1L |
55 | 19 | 19378671 | 19892796 | 2 | 1 | 6.3e-08 | 3.0e-06 | 6.7e-01 | 99 | TSSK6 |
56 | 20 | 31382860 | 35512648 | 35 | 11 | 1.4e-27 | 3.7e-30 | NaN | NaN | CEP250 E2F1 GDF5 GGT7 MMP24 TP53INP2 UQCC UQCC1 |
Trait | chisq ratio | # genes+ | # genes++ | % genes++ | corr | corr P | genes |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|
study | tissue | # hits | % hits/tests | avg chisq |
---|---|---|---|---|
GTEx | Adipose Subcutaneous | 22 | 0.63 | 2.3 |
GTEx | Artery Tibial | 27 | 0.72 | 2.3 |
GTEx | Brain Cortex | 6 | 0.58 | 2.3 |
GTEx | Brain Hippocampus | 2 | 0.38 | 2.3 |
GTEx | Breast Mammary Tissue (Male) | 10 | 0.84 | 2.3 |
GTEx | Ovary | 4 | 0.44 | 2.3 |
GTEx | Pituitary | 10 | 0.90 | 2.3 |
GTEx | Testis | 21 | 0.67 | 2.3 |
GTEx | Adipose Visceral Omentum | 9 | 0.44 | 2.2 |
GTEx | Artery Aorta | 16 | 0.54 | 2.2 |
GTEx | Brain Cerebellum | 10 | 0.50 | 2.2 |
GTEx | Brain Hypothalamus | 5 | 0.85 | 2.2 |
GTEx | Brain Nucleus accumbens basal ganglia | 5 | 0.58 | 2.2 |
GTEx | Cells EBV-transformed lymphocytes | 10 | 0.70 | 2.2 |
GTEx | Colon Sigmoid | 5 | 0.34 | 2.2 |
GTEx | Colon Transverse | 13 | 0.63 | 2.2 |
GTEx | Esophagus Mucosa | 26 | 0.78 | 2.2 |
GTEx | Esophagus Muscularis | 17 | 0.53 | 2.2 |
GTEx | Heart Atrial Appendage | 11 | 0.70 | 2.2 |
GTEx | Lung | 17 | 0.59 | 2.2 |
GTEx | Muscle Skeletal | 17 | 0.59 | 2.2 |
GTEx | Nerve Tibial | 28 | 0.65 | 2.2 |
GTEx | Pancreas | 11 | 0.67 | 2.2 |
GTEx | Skin Sun Exposed Lower leg | 21 | 0.58 | 2.2 |
GTEx | Spleen | 7 | 0.50 | 2.2 |
GTEx | Thyroid | 23 | 0.58 | 2.2 |
GTEx | Whole Blood | 9 | 0.45 | 2.2 |
GTEx | Adrenal Gland | 6 | 0.41 | 2.1 |
GTEx | Artery Coronary | 4 | 0.34 | 2.1 |
GTEx | Brain Cerebellar Hemisphere | 6 | 0.40 | 2.1 |
GTEx | Brain Frontal Cortex BA9 | 4 | 0.43 | 2.1 |
GTEx | Brain Putamen basal ganglia | 4 | 0.64 | 2.1 |
GTEx | Breast Mammary Tissue | 11 | 0.56 | 2.1 |
GTEx | Breast Mammary Tissue (Female) | 7 | 0.43 | 2.1 |
GTEx | Cells Transformed fibroblasts | 15 | 0.36 | 2.1 |
GTEx | Esophagus Gastroesophageal Junction | 7 | 0.48 | 2.1 |
GTEx | Liver | 3 | 0.42 | 2.1 |
GTEx | Prostate | 2 | 0.24 | 2.1 |
GTEx | Skin Not Sun Exposed Suprapubic | 15 | 0.61 | 2.1 |
GTEx | Small Intestine Terminal Ileum | 2 | 0.43 | 2.1 |
GTEx | Stomach | 11 | 0.76 | 2.1 |
ROSMAP | Brain Pre-frontal Cortex | 18 | 0.41 | 2.1 |
The Cancer Genome Atlas | Colon Adenocarcinoma | 8 | 0.39 | 2.1 |
The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | 12 | 0.44 | 2.1 |
The Cancer Genome Atlas | Brain Lower Grade Glioma | 20 | 0.46 | 2.1 |
The Cancer Genome Atlas | Soft Tissue Sarcoma | 5 | 0.47 | 2.1 |
The Cancer Genome Atlas | Uterine Corpus Endometrial Carcinoma | 4 | 0.79 | 2.1 |
GTEx | Brain Caudate basal ganglia | 2 | 0.22 | 2.0 |
GTEx | Heart Left Ventricle | 4 | 0.26 | 2.0 |
GTEx | Uterus | 0 | 0.00 | 2.0 |
METSIM | Adipose | 17 | 0.37 | 2.0 |
NTR | Blood | 10 | 0.42 | 2.0 |
CommonMind | Brain Pre-frontal Cortex | 23 | 0.43 | 2.0 |
The Cancer Genome Atlas | Bladder Urothelial Carcinoma | 7 | 0.42 | 2.0 |
The Cancer Genome Atlas | Breast Invasive Carcinoma | 17 | 0.39 | 2.0 |
The Cancer Genome Atlas | Glioblastoma Multiforme | 3 | 0.29 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | 15 | 0.37 | 2.0 |
The Cancer Genome Atlas | Kidney Renal Papillary Cell Carcinoma | 6 | 0.29 | 2.0 |
The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | 6 | 0.54 | 2.0 |
The Cancer Genome Atlas | Ovarian Serous Cystadenocarcinoma | 4 | 0.25 | 2.0 |
The Cancer Genome Atlas | Prostate Adenocarcinoma | 21 | 0.45 | 2.0 |
The Cancer Genome Atlas | Stomach Adenocarcinoma | 2 | 0.12 | 2.0 |
YFS | Blood | 17 | 0.37 | 1.9 |
The Cancer Genome Atlas | Cervical Squamous Cell Carcinoma | 3 | 0.27 | 1.9 |
The Cancer Genome Atlas | Esophageal Carcinoma | 4 | 0.58 | 1.9 |
The Cancer Genome Atlas | Lung Adenocarcinoma | 13 | 0.44 | 1.9 |
The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | 10 | 0.40 | 1.9 |
The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | 4 | 0.30 | 1.9 |
The Cancer Genome Atlas | Rectum Adenocarcinoma | 0 | 0.00 | 1.9 |
The Cancer Genome Atlas | Skin Cutaneous Melanoma | 1 | 0.19 | 1.9 |
The Cancer Genome Atlas | Thyroid Carcinoma | 21 | 0.41 | 1.9 |
GTEx | Vagina | 1 | 0.16 | 1.8 |
The Cancer Genome Atlas | Pancreatic Adenocarcinoma | 3 | 0.18 | 1.8 |
The Cancer Genome Atlas | Testicular Germ Cell Tumors | 3 | 0.23 | 1.8 |