Best TWAS P=5.72e-12 · Best GWAS P=9.27e-58 conditioned to 1.84e-48
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Adipose Subcutaneous | TMEM18 | 0.32 | 0.21 | lasso | 9 | 0.25 | 4.7e-20 | 4.1 | 5.5 | 4.6e-08 | -0.23 | 1.00 | 0.00 | FALSE |
| 2 | GTEx | Artery Aorta | AC092159.2 | 0.29 | 0.19 | enet | 9 | 0.23 | 9.7e-13 | 4.6 | 5.4 | 8.4e-08 | -0.19 | 1.00 | 0.00 | FALSE |
| 3 | GTEx | Artery Tibial | SH3YL1 | 0.10 | 0.02 | lasso | 3 | 0.01 | 2.9e-02 | -4.1 | -6.5 | 8.1e-11 | 0.09 | 0.65 | 0.03 | FALSE |
| 4 | GTEx | Artery Tibial | TMEM18 | 0.35 | 0.08 | enet | 28 | 0.19 | 9.2e-15 | 4.6 | 5.5 | 3.2e-08 | -0.19 | 1.00 | 0.00 | FALSE |
| 5 | GTEx | Artery Tibial | AC092159.2 | 0.38 | 0.24 | lasso | 5 | 0.30 | 5.6e-24 | 5.1 | 6.1 | 9.1e-10 | -0.19 | 1.00 | 0.00 | FALSE |
| 6 | GTEx | Esophagus Muscularis | TMEM18 | 0.37 | 0.20 | lasso | 8 | 0.18 | 2.0e-11 | 5.1 | 6.0 | 2.4e-09 | -0.28 | 1.00 | 0.00 | FALSE |
| 7 | GTEx | Esophagus Muscularis | AC092159.2 | 0.26 | 0.16 | enet | 7 | 0.20 | 5.3e-12 | 5.1 | 5.6 | 2.6e-08 | -0.30 | 1.00 | 0.00 | FALSE |
| 8 | GTEx | Heart Left Ventricle | TMEM18 | 0.22 | 0.19 | lasso | 7 | 0.16 | 8.3e-09 | 4.8 | 6.2 | 4.1e-10 | -0.19 | 0.99 | 0.00 | TRUE |
| 9 | GTEx | Heart Left Ventricle | AC092159.2 | 0.35 | 0.24 | lasso | 6 | 0.23 | 2.3e-12 | 4.8 | 5.7 | 1.3e-08 | -0.20 | 1.00 | 0.00 | FALSE |
| 10 | GTEx | Nerve Tibial | SH3YL1 | 0.33 | 0.23 | enet | 35 | 0.25 | 5.6e-18 | -4.1 | -5.2 | 1.7e-07 | 0.07 | 1.00 | 0.00 | FALSE |
| 11 | GTEx | Nerve Tibial | AC092159.2 | 0.18 | 0.09 | lasso | 5 | 0.10 | 1.5e-07 | 5.1 | 5.2 | 1.6e-07 | -0.16 | 0.99 | 0.00 | FALSE |
| 12 | GTEx | Ovary | SH3YL1 | 0.48 | 0.29 | enet | 18 | 0.34 | 3.2e-09 | -3.8 | -5.6 | 2.1e-08 | 0.15 | 0.67 | 0.03 | FALSE |
| 13 | METSIM | Adipose | TMEM18 | 0.20 | 0.12 | lasso | 6 | 0.12 | 9.2e-17 | 4.8 | 5.2 | 2.4e-07 | -0.19 | 1.00 | 0.00 | FALSE |
| 14 | ROSMAP | Brain Pre-frontal Cortex | FAM150B | 0.06 | 0.01 | bslmm | 381 | 0.03 | 9.9e-05 | 6.0 | 6.9 | 5.7e-12 | -0.07 | 0.40 | 0.02 | TRUE |
| 15 | The Cancer Genome Atlas | Soft Tissue Sarcoma | SH3YL1 | 0.07 | 0.04 | enet | 9 | 0.05 | 1.0e-03 | 5.7 | -5.2 | 2.2e-07 | 0.03 | 0.01 | 0.87 | FALSE |
| 16 | The Cancer Genome Atlas | Stomach Adenocarcinoma | TMEM18 | 0.11 | 0.01 | blup | 74 | 0.04 | 1.3e-03 | 4.1 | 5.7 | 1.4e-08 | -0.23 | 0.11 | 0.04 | FALSE |