Best TWAS P=9.68e-11 · Best GWAS P=3.53e-09 conditioned to 0.705
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | L3MBTL3 | 0.20 | 0.08 | lasso | 4 | 0.09 | 1.1e-07 | -4.7 | -5.7 | 1.1e-08 | 0.89 | 0.08 | 0.92 | FALSE |
2 | GTEx | Adipose Visceral Omentum | L3MBTL3 | 0.14 | 0.12 | lasso | 2 | 0.15 | 2.8e-08 | -4.7 | -5.5 | 4.6e-08 | 0.90 | 0.02 | 0.97 | FALSE |
3 | GTEx | Breast Mammary Tissue | L3MBTL3 | 0.31 | 0.25 | lasso | 7 | 0.23 | 2.8e-12 | -4.7 | -5.3 | 1.2e-07 | 0.89 | 0.04 | 0.96 | FALSE |
4 | GTEx | Breast Mammary Tissue | RP11-73O6.3 | 0.27 | 0.22 | lasso | 9 | 0.22 | 1.5e-11 | -4.7 | -5.1 | 3.0e-07 | 0.85 | 0.16 | 0.84 | FALSE |
5 | GTEx | Breast Mammary Tissue (Male) | L3MBTL3 | 0.31 | 0.24 | lasso | 6 | 0.23 | 5.5e-06 | -4.7 | -5.3 | 1.2e-07 | 0.91 | 0.02 | 0.91 | FALSE |
6 | GTEx | Breast Mammary Tissue (Female) | L3MBTL3 | 0.30 | 0.13 | lasso | 5 | 0.14 | 4.5e-05 | -3.4 | -5.1 | 2.8e-07 | 0.86 | 0.02 | 0.95 | FALSE |
7 | GTEx | Breast Mammary Tissue (Female) | RP11-73O6.3 | 0.29 | 0.08 | lasso | 5 | 0.10 | 5.7e-04 | -4.7 | -5.3 | 1.2e-07 | 0.85 | 0.02 | 0.92 | FALSE |
8 | GTEx | Colon Transverse | L3MBTL3 | 0.27 | 0.13 | lasso | 8 | 0.20 | 8.0e-10 | -4.7 | -5.6 | 2.0e-08 | 0.87 | 0.02 | 0.98 | FALSE |
9 | GTEx | Lung | L3MBTL3 | 0.37 | 0.34 | lasso | 4 | 0.38 | 4.1e-30 | -4.7 | -5.4 | 5.1e-08 | 0.89 | 0.34 | 0.66 | FALSE |
10 | GTEx | Lung | RP11-73O6.3 | 0.15 | 0.08 | lasso | 5 | 0.12 | 2.2e-09 | -4.7 | -5.5 | 2.9e-08 | 0.91 | 0.02 | 0.98 | FALSE |
11 | GTEx | Nerve Tibial | L3MBTL3 | 0.30 | 0.23 | lasso | 4 | 0.22 | 2.3e-15 | -4.7 | -5.1 | 2.6e-07 | 0.87 | 0.69 | 0.30 | FALSE |
12 | GTEx | Pancreas | L3MBTL3 | 0.32 | 0.17 | lasso | 4 | 0.23 | 4.4e-10 | -4.7 | -5.3 | 1.4e-07 | 0.88 | 0.09 | 0.91 | FALSE |
13 | GTEx | Skin Sun Exposed Lower leg | L3MBTL3 | 0.25 | 0.25 | lasso | 9 | 0.24 | 1.4e-19 | -4.7 | -5.2 | 2.3e-07 | 0.86 | 0.58 | 0.41 | FALSE |
14 | GTEx | Small Intestine Terminal Ileum | L3MBTL3 | 0.37 | 0.20 | lasso | 4 | 0.17 | 1.3e-04 | -4.7 | -5.1 | 3.1e-07 | 0.86 | 0.02 | 0.87 | FALSE |
15 | GTEx | Spleen | L3MBTL3 | 0.64 | 0.34 | enet | 14 | 0.48 | 6.4e-14 | -4.7 | -5.6 | 1.7e-08 | 0.88 | 0.04 | 0.96 | FALSE |
16 | GTEx | Stomach | RP11-73O6.3 | 0.21 | 0.12 | lasso | 6 | 0.06 | 5.9e-04 | -5.9 | -6.5 | 9.7e-11 | 0.89 | 0.01 | 0.96 | TRUE |
17 | GTEx | Thyroid | L3MBTL3 | 0.40 | 0.39 | enet | 9 | 0.43 | 2.8e-35 | -4.7 | -5.5 | 2.9e-08 | 0.90 | 0.69 | 0.30 | FALSE |
18 | GTEx | Thyroid | RP11-73O6.3 | 0.18 | 0.15 | lasso | 3 | 0.20 | 2.3e-15 | -5.6 | -5.6 | 2.3e-08 | 0.91 | 0.02 | 0.98 | FALSE |