TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Impedance of arm (right)
:
←
→
chr3:183,204,923-184,607,480
Best TWAS P=3.63e-11 · Best GWAS P=5.15e-14 conditioned to 0.0403
183.2M
183.4M
183.6M
183.8M
184M
184.2M
184.4M
184.6M
0
5
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Lung Adenocarcinoma
PSMD2
0.09
0.02
blup
50
0.05
1.2e-06
7.5
-6.6
3.6e-11
-0.78
0.00
0.99
TRUE
3
The Cancer Genome Atlas
Liver Hepatocellular Carcinoma
ABCF3
0.08
0.03
blup
51
0.06
6.1e-04
-3.2
-5.4
7.5e-08
-0.22
0.02
0.65
TRUE
5
The Cancer Genome Atlas
Testicular Germ Cell Tumors
VWA5B2
0.10
0.04
blup
51
0.04
1.8e-02
-5.2
6.3
3.5e-10
0.37
0.03
0.33
FALSE
1
GTEx
Skin Sun Exposed Lower leg
ABCF3
0.13
0.08
lasso
4
0.11
1.6e-09
-5.3
-5.7
1.0e-08
-0.33
0.96
0.03
FALSE
2
The Cancer Genome Atlas
Colon Adenocarcinoma
ABCF3
0.07
0.00
blup
51
0.01
4.4e-02
-5.2
-5.3
1.4e-07
-0.25
0.01
0.86
FALSE