Best TWAS P=6.18e-08 · Best GWAS P=1.29e-06 conditioned to 0.0867
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | CommonMind | Brain Pre-frontal Cortex | SLC26A1 | 0.12 | 0.06 | bslmm | 400 | 0.08 | 8.0e-10 | 4.0 | 5.3 | 1.4e-07 | 0.42 | 0.07 | 0.67 | TRUE |
| 2 | NTR | Blood | PCGF3 | 0.07 | 0.00 | enet | 33 | 0.02 | 7.7e-08 | 3.5 | 5.1 | 2.8e-07 | 0.37 | 0.07 | 0.58 | FALSE |
| 3 | The Cancer Genome Atlas | Breast Invasive Carcinoma | PCGF3 | 0.03 | 0.00 | blup | 69 | 0.01 | 3.7e-03 | 3.5 | 5.4 | 6.2e-08 | 0.44 | 0.00 | 0.03 | TRUE |