TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Leg fat-free mass (right)
:
←
→
chr17:1,717,695-2,477,695
Best TWAS P=5.88e-09 · Best GWAS P=1.23e-10 conditioned to 0.00407
1.7M
1.8M
1.9M
2M
2.1M
2.2M
2.3M
2.4M
2.5M
0
2
4
6
8
10
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
The Cancer Genome Atlas
Breast Invasive Carcinoma
SMG6
0.03
0.01
blup
144
0.01
0.00478
5.6
5.8
5.9e-09
0.83
0.08
0.66
TRUE
2
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
SMG6
0.08
0.05
blup
144
0.07
0.00013
6.4
5.6
2.0e-08
0.85
0.01
0.99
FALSE
3
The Cancer Genome Atlas
Skin Cutaneous Melanoma
SRR
0.16
0.03
blup
61
0.02
0.08720
-2.9
5.3
1.1e-07
0.82
0.03
0.23
FALSE