Best TWAS P=9.14e-09 · Best GWAS P=8.37e-12 conditioned to 7.65e-06
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | GTEx | Breast Mammary Tissue (Female) | DESI1 | 0.14 | 0.07 | lasso | 4 | 0.11 | 4.2e-04 | -4.9 | 5.1 | 2.9e-07 | -0.45 | 0.08 | 0.12 | FALSE |
| 2 | GTEx | Skin Sun Exposed Lower leg | CENPM | 0.05 | 0.00 | enet | 8 | 0.02 | 1.5e-02 | -4.9 | 5.6 | 2.4e-08 | -0.53 | 0.07 | 0.43 | FALSE |
| 3 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | WBP2NL | 0.06 | 0.04 | blup | 140 | 0.03 | 9.6e-05 | -4.9 | 5.7 | 9.1e-09 | -0.53 | 0.58 | 0.25 | TRUE |