TWAS
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Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Leg fat mass (left)
:
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→
chr17:40,120,771-41,510,850
Best TWAS P=1.37e-07 · Best GWAS P=3.33e-08 conditioned to 8.7e-06
40.2M
40.4M
40.6M
40.8M
41M
41.2M
41.4M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Brain Caudate basal ganglia
TUBG2
0.39
0.24
enet
45
0.25
7.7e-08
-4.1
-5.3
1.4e-07
0.23
0.30
0.64
TRUE
2
NTR
Blood
TUBG2
0.01
0.00
blup
247
0.01
4.0e-03
-3.0
5.1
3.0e-07
-0.44
0.35
0.23
FALSE