TWAS
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Traits
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Traits
:
Leg fat-free mass (left)
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chr1:106,906,072-108,296,508
Best TWAS P=7.74e-08 · Best GWAS P=1e-09 conditioned to 8.49e-11
107M
107.2M
107.4M
107.6M
107.8M
108M
108.2M
0
2
4
6
8
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
3
GTEx
Muscle Skeletal
PRMT6
0.32
0.16
enet
13
0.16
2.8e-15
5.0
-5.4
7.7e-08
-0.07
0.71
0.29
TRUE
5
The Cancer Genome Atlas
Ovarian Serous Cystadenocarcinoma
PRMT6
0.09
0.08
blup
36
0.08
3.3e-06
5.0
-5.2
1.6e-07
-0.08
0.01
0.99
FALSE
4
GTEx
Thyroid
PRMT6
0.19
0.17
enet
14
0.19
1.7e-14
5.0
-5.2
2.0e-07
-0.06
0.71
0.29
FALSE
2
GTEx
Liver
PRMT6
0.60
0.52
lasso
6
0.58
1.0e-19
4.9
-5.2
2.3e-07
-0.07
0.71
0.29
FALSE
1
GTEx
Colon Transverse
PRMT6
0.29
0.24
lasso
7
0.19
1.4e-09
4.9
-5.1
3.0e-07
-0.08
0.73
0.27
FALSE