TWAS
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Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Leg fat-free mass (left)
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chr3:84,317,575-86,808,226
Best TWAS P=4.2e-15 · Best GWAS P=6.12e-16 conditioned to 0.00339
84.5M
85M
85.5M
86M
86.5M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
CADM2
0.05
0.03
lasso
3
0.04
5.0e-05
7.6
7.8
4.2e-15
0.81
0.12
0.87
TRUE
3
The Cancer Genome Atlas
Lung Adenocarcinoma
CADM2
0.08
0.04
lasso
4
0.05
2.1e-06
7.6
7.8
9.1e-15
0.77
0.22
0.78
FALSE
1
METSIM
Adipose
CADM2
0.05
0.06
lasso
10
0.06
1.3e-09
6.4
7.1
1.4e-12
0.63
0.90
0.10
FALSE
2
The Cancer Genome Atlas
Brain Lower Grade Glioma
CADM2
0.06
0.00
blup
339
0.00
2.7e-01
-5.4
-5.7
1.5e-08
-0.39
0.06
0.15
FALSE