Best TWAS P=4.74e-13 · Best GWAS P=9.75e-13 conditioned to 0.74
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | ACBD4 | 0.10 | 0.06 | enet | 8 | 0.06 | 1.8e-05 | -5.9 | -6.6 | 4.7e-11 | 0.52 | 0.51 | 0.37 | FALSE |
2 | GTEx | Artery Aorta | DCAKD | 0.22 | 0.16 | enet | 26 | 0.19 | 1.1e-10 | -2.6 | 5.3 | 9.9e-08 | -0.46 | 0.93 | 0.06 | FALSE |
3 | GTEx | Artery Coronary | NMT1 | 0.13 | 0.06 | enet | 7 | 0.11 | 1.5e-04 | 4.0 | -5.2 | 1.5e-07 | 0.53 | 0.08 | 0.50 | TRUE |
4 | GTEx | Artery Tibial | KANSL1 | 0.31 | 0.07 | lasso | 6 | 0.07 | 1.7e-06 | 4.5 | -5.3 | 1.1e-07 | -0.01 | 0.00 | 0.93 | FALSE |
5 | GTEx | Artery Tibial | ACBD4 | 0.10 | 0.09 | lasso | 2 | 0.08 | 4.8e-07 | -6.0 | -6.0 | 2.1e-09 | 0.58 | 0.66 | 0.29 | FALSE |
6 | GTEx | Breast Mammary Tissue | KANSL1 | 0.31 | 0.00 | enet | 9 | 0.11 | 2.6e-06 | 4.5 | -6.2 | 7.6e-10 | 0.08 | 0.00 | 0.05 | TRUE |
7 | GTEx | Breast Mammary Tissue (Female) | FZD2 | 0.10 | 0.08 | lasso | 2 | 0.05 | 1.1e-02 | 5.2 | 5.5 | 5.1e-08 | -0.07 | 0.04 | 0.15 | FALSE |
8 | GTEx | Esophagus Gastroesophageal Junction | NMT1 | 0.24 | 0.21 | lasso | 4 | 0.22 | 2.8e-08 | 3.0 | -5.1 | 3.0e-07 | 0.54 | 0.17 | 0.81 | FALSE |
9 | GTEx | Esophagus Mucosa | ADAM11 | 0.19 | 0.14 | lasso | 4 | 0.12 | 1.2e-08 | 5.1 | 5.2 | 2.4e-07 | -0.07 | 0.99 | 0.01 | FALSE |
10 | GTEx | Esophagus Mucosa | ACBD4 | 0.14 | 0.10 | lasso | 4 | 0.10 | 4.5e-07 | 4.8 | -5.2 | 1.8e-07 | 0.13 | 0.59 | 0.08 | FALSE |
11 | GTEx | Esophagus Muscularis | KANSL1 | 0.41 | 0.11 | enet | 8 | 0.15 | 1.3e-09 | 4.5 | -5.5 | 5.0e-08 | 0.05 | 0.00 | 0.93 | FALSE |
12 | GTEx | Lung | KANSL1 | 0.34 | 0.07 | enet | 30 | 0.11 | 1.7e-08 | 4.5 | -5.3 | 1.1e-07 | 0.00 | 0.00 | 0.88 | FALSE |
13 | GTEx | Nerve Tibial | ACBD4 | 0.21 | 0.10 | lasso | 5 | 0.11 | 4.2e-08 | -5.3 | -6.4 | 1.2e-10 | 0.47 | 0.84 | 0.16 | FALSE |
14 | GTEx | Skin Sun Exposed Lower leg | ACBD4 | 0.06 | 0.05 | lasso | 4 | 0.02 | 3.8e-03 | 4.9 | -6.4 | 1.5e-10 | 0.33 | 0.19 | 0.08 | FALSE |
15 | GTEx | Stomach | DCAKD | 0.29 | 0.17 | enet | 25 | 0.20 | 9.4e-10 | -2.6 | 5.1 | 2.9e-07 | -0.48 | 0.62 | 0.37 | FALSE |
16 | GTEx | Thyroid | ACBD4 | 0.20 | 0.16 | enet | 23 | 0.15 | 1.2e-11 | -5.8 | -7.2 | 4.7e-13 | 0.51 | 0.80 | 0.20 | TRUE |
17 | METSIM | Adipose | C17orf104 | 0.05 | 0.02 | bslmm | 404 | 0.04 | 4.2e-06 | 5.0 | -5.2 | 1.6e-07 | 0.11 | 0.91 | 0.00 | FALSE |
18 | YFS | Blood | NMT1 | 0.02 | 0.01 | lasso | 6 | 0.01 | 5.0e-03 | 5.1 | -5.2 | 2.7e-07 | 0.37 | 0.26 | 0.11 | FALSE |
19 | The Cancer Genome Atlas | Brain Lower Grade Glioma | ACBD4 | 0.08 | 0.04 | enet | 9 | 0.04 | 6.9e-06 | -5.8 | -5.4 | 7.3e-08 | 0.50 | 0.77 | 0.19 | FALSE |
20 | The Cancer Genome Atlas | Pancreatic Adenocarcinoma | NMT1 | 0.23 | 0.08 | blup | 82 | 0.12 | 1.1e-05 | 2.9 | -5.2 | 1.6e-07 | 0.55 | 0.05 | 0.90 | FALSE |
21 | The Cancer Genome Atlas | Thyroid Carcinoma | HEXIM1 | 0.05 | 0.05 | blup | 47 | 0.04 | 8.5e-05 | -7.1 | 6.3 | 2.7e-10 | -0.84 | 0.00 | 1.00 | FALSE |
22 | The Cancer Genome Atlas | Thyroid Carcinoma | PLCD3 | 0.24 | 0.16 | lasso | 5 | 0.20 | 2.8e-19 | 4.8 | 5.3 | 9.4e-08 | -0.15 | 1.00 | 0.00 | FALSE |