Best TWAS P=1.36e-18 · Best GWAS P=2.27e-16 conditioned to 0.274
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.08 | lasso | 2 | 0.07 | 6.8e-09 | 8.2 | 8.3 | 1.3e-16 | 0.99 | 0.01 | 0.99 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | MTOR | 0.13 | 0.15 | lasso | 4 | 0.15 | 5.6e-18 | 7.9 | 7.8 | 8.0e-15 | 0.88 | 0.06 | 0.94 | FALSE |
3 | GTEx | Adipose Subcutaneous | MASP2 | 0.10 | 0.06 | lasso | 2 | 0.03 | 8.8e-04 | 5.9 | 5.9 | 4.5e-09 | 0.69 | 0.51 | 0.28 | FALSE |
4 | GTEx | Adipose Subcutaneous | EXOSC10 | 0.17 | 0.00 | lasso | 3 | 0.00 | 1.8e-01 | 8.0 | 7.7 | 1.0e-14 | 0.94 | 0.02 | 0.55 | FALSE |
5 | GTEx | Adipose Visceral Omentum | RP4-635E18.7 | 0.19 | 0.08 | lasso | 6 | 0.05 | 9.0e-04 | 8.2 | 7.6 | 2.5e-14 | 0.96 | 0.02 | 0.96 | FALSE |
6 | GTEx | Brain Cerebellar Hemisphere | EXOSC10 | 0.23 | 0.10 | lasso | 3 | 0.12 | 6.4e-04 | 7.5 | 7.7 | 1.2e-14 | 0.90 | 0.05 | 0.73 | FALSE |
7 | GTEx | Brain Cerebellum | EXOSC10 | 0.33 | 0.16 | lasso | 6 | 0.18 | 3.8e-06 | 8.1 | 8.1 | 4.0e-16 | 0.94 | 0.02 | 0.97 | FALSE |
8 | GTEx | Brain Cerebellum | RP4-635E18.7 | 0.17 | 0.17 | lasso | 5 | 0.09 | 1.3e-03 | 8.1 | 8.0 | 9.9e-16 | 0.96 | 0.02 | 0.94 | FALSE |
9 | GTEx | Brain Cortex | RP4-635E18.7 | 0.17 | 0.05 | lasso | 4 | 0.07 | 6.4e-03 | 7.9 | 7.9 | 2.2e-15 | 0.91 | 0.04 | 0.76 | FALSE |
10 | GTEx | Lung | EXOSC10 | 0.11 | 0.07 | lasso | 4 | 0.05 | 1.2e-04 | 8.1 | 8.0 | 9.5e-16 | 0.97 | 0.01 | 0.98 | FALSE |
11 | GTEx | Nerve Tibial | MASP2 | 0.14 | 0.07 | lasso | 5 | 0.09 | 1.2e-06 | 5.9 | 5.8 | 7.1e-09 | 0.68 | 0.36 | 0.55 | FALSE |
12 | GTEx | Thyroid | RP4-635E18.7 | 0.07 | 0.02 | lasso | 2 | 0.01 | 5.5e-02 | 8.1 | 8.7 | 2.4e-18 | 0.93 | 0.02 | 0.91 | FALSE |
13 | GTEx | Whole Blood | MTOR | 0.16 | 0.06 | enet | 18 | 0.07 | 5.1e-07 | 7.3 | 6.0 | 1.6e-09 | 0.66 | 0.76 | 0.23 | FALSE |
14 | METSIM | Adipose | EXOSC10 | 0.05 | 0.06 | lasso | 1 | 0.05 | 3.5e-08 | 6.4 | 6.4 | 1.2e-10 | 0.85 | 0.02 | 0.98 | FALSE |
15 | METSIM | Adipose | MTOR | 0.04 | 0.02 | bslmm | 434 | 0.02 | 1.5e-04 | 7.9 | 7.9 | 2.7e-15 | 0.89 | 0.03 | 0.97 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.06 | lasso | 2 | 0.06 | 4.9e-08 | 8.2 | 8.2 | 2.6e-16 | 1.00 | 0.01 | 0.99 | FALSE |
17 | ROSMAP | Brain Pre-frontal Cortex | MTOR | 0.07 | 0.05 | bslmm | 423 | 0.04 | 2.0e-06 | 7.9 | 8.8 | 1.4e-18 | 0.87 | 0.09 | 0.91 | TRUE |
18 | ROSMAP | Brain Pre-frontal Cortex | RP4-635E18.7 | 0.23 | 0.09 | enet | 24 | 0.24 | 3.8e-30 | 5.6 | 6.0 | 2.1e-09 | 0.71 | 0.02 | 0.98 | FALSE |
19 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MTOR | 0.02 | 0.02 | blup | 54 | 0.02 | 5.4e-03 | 7.8 | 7.9 | 2.2e-15 | 0.91 | 0.07 | 0.67 | FALSE |
20 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTOR | 0.03 | 0.01 | blup | 54 | 0.02 | 5.9e-03 | 7.8 | 7.7 | 1.3e-14 | 0.88 | 0.03 | 0.73 | FALSE |
21 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MASP2 | 0.05 | 0.03 | blup | 30 | 0.04 | 6.0e-03 | 2.7 | -6.7 | 2.2e-11 | -0.84 | 0.02 | 0.58 | FALSE |