TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Arm fat-free mass (right)
:
←
→
chr9:135,883,620-137,596,949
Best TWAS P=1.27e-08 · Best GWAS P=1.73e-08 conditioned to 1.63e-07
135.8M
136M
136.2M
136.4M
136.6M
136.8M
137M
137.2M
137.4M
137.6M
0
2
4
6
8
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
4
The Cancer Genome Atlas
Rectum Adenocarcinoma
ABO
0.48
0.23
enet
10
0.27
4.7e-07
-5.0
-5.7
1.3e-08
0.08
0.00
0.96
TRUE
1
GTEx
Skin Sun Exposed Lower leg
LINC00094
0.14
0.01
enet
40
0.03
1.7e-03
-3.8
-5.1
2.9e-07
-0.01
0.53
0.08
TRUE
3
The Cancer Genome Atlas
Pancreatic Adenocarcinoma
ABO
0.23
0.21
lasso
5
0.20
6.7e-09
-5.1
-5.2
2.4e-07
0.07
0.00
0.99
FALSE
2
The Cancer Genome Atlas
Colon Adenocarcinoma
ABO
0.27
0.31
blup
43
0.33
2.1e-19
-4.9
-5.1
2.6e-07
0.08
0.00
0.99
FALSE