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Traits
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Arm fat-free mass (right)
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chr9:138,628,816-140,321,666
Best TWAS P=6.73e-10 · Best GWAS P=5.79e-07 conditioned to 0.0873
138.6M
138.8M
139M
139.2M
139.4M
139.6M
139.8M
140M
140.2M
140.4M
0
1
2
3
4
5
6
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Brain Caudate basal ganglia
SNHG7
0.37
0.10
lasso
6
0.27
2.5e-08
-3.4
6.2
6.7e-10
0.39
0.06
0.57
TRUE
3
GTEx
Ovary
SEC16A
0.33
0.06
enet
10
0.14
3.4e-04
4.3
-5.5
3.9e-08
-0.45
0.04
0.27
TRUE
2
GTEx
Ovary
INPP5E
0.24
0.13
enet
11
0.15
1.9e-04
4.5
-5.8
5.8e-09
-0.59
0.05
0.62
FALSE
4
GTEx
Uterus
INPP5E
0.60
0.04
enet
10
0.22
3.4e-05
4.8
-5.3
1.3e-07
-0.53
0.04
0.46
FALSE
5
The Cancer Genome Atlas
Kidney Renal Papillary Cell Carcinoma
INPP5E
0.07
0.04
blup
54
0.07
6.0e-05
5.0
-5.3
1.3e-07
-0.84
0.01
0.94
FALSE