Best TWAS P=7.31e-09 · Best GWAS P=3e-10 conditioned to 4.35e-08
| # | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | YFS | Blood | MGA | 0.01 | 0.00 | blup | 454 | 0.00 | 7.1e-02 | -3.3 | -5.3 | 1.1e-07 | -0.27 | 0.12 | 0.10 | TRUE |
| 2 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CHP | 0.06 | 0.01 | blup | 54 | 0.03 | 4.7e-04 | -3.3 | 5.8 | 7.3e-09 | 0.03 | 0.03 | 0.14 | TRUE |
| 3 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CHP | 0.21 | 0.11 | lasso | 4 | 0.12 | 5.1e-13 | -5.0 | 5.4 | 7.2e-08 | 0.08 | 0.00 | 1.00 | FALSE |