Best TWAS P=3.45e-18 · Best GWAS P=3.21e-16 conditioned to 0.235
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | CommonMind | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.08 | lasso | 2 | 0.07 | 6.8e-09 | 8.2 | 8.2 | 1.9e-16 | 0.99 | 0.01 | 0.99 | FALSE |
2 | CommonMind | Brain Pre-frontal Cortex | MTOR | 0.13 | 0.15 | lasso | 4 | 0.15 | 5.6e-18 | 7.9 | 7.8 | 6.2e-15 | 0.88 | 0.05 | 0.95 | FALSE |
3 | GTEx | Adipose Subcutaneous | MASP2 | 0.10 | 0.06 | lasso | 2 | 0.03 | 8.8e-04 | 6.3 | 6.3 | 3.4e-10 | 0.69 | 0.46 | 0.35 | FALSE |
4 | GTEx | Adipose Subcutaneous | EXOSC10 | 0.17 | 0.00 | lasso | 3 | 0.00 | 1.8e-01 | 8.0 | 7.3 | 2.6e-13 | 0.94 | 0.02 | 0.49 | FALSE |
5 | GTEx | Adipose Visceral Omentum | RP4-635E18.7 | 0.19 | 0.08 | lasso | 6 | 0.05 | 9.0e-04 | 8.2 | 7.7 | 2.0e-14 | 0.96 | 0.02 | 0.96 | FALSE |
6 | GTEx | Brain Cerebellar Hemisphere | EXOSC10 | 0.23 | 0.10 | lasso | 3 | 0.12 | 6.4e-04 | 7.7 | 8.0 | 1.8e-15 | 0.90 | 0.04 | 0.79 | FALSE |
7 | GTEx | Brain Cerebellum | EXOSC10 | 0.33 | 0.16 | lasso | 6 | 0.18 | 3.8e-06 | 8.0 | 8.2 | 2.4e-16 | 0.94 | 0.03 | 0.96 | FALSE |
8 | GTEx | Brain Cerebellum | RP4-635E18.7 | 0.17 | 0.17 | lasso | 5 | 0.09 | 1.3e-03 | 8.0 | 8.1 | 8.1e-16 | 0.96 | 0.03 | 0.93 | FALSE |
9 | GTEx | Brain Cortex | RP4-635E18.7 | 0.17 | 0.05 | lasso | 4 | 0.07 | 6.4e-03 | 7.9 | 8.0 | 1.4e-15 | 0.91 | 0.04 | 0.76 | FALSE |
10 | GTEx | Lung | EXOSC10 | 0.11 | 0.07 | lasso | 4 | 0.05 | 1.2e-04 | 8.0 | 7.8 | 4.6e-15 | 0.97 | 0.02 | 0.98 | FALSE |
11 | GTEx | Nerve Tibial | MASP2 | 0.14 | 0.07 | lasso | 5 | 0.09 | 1.2e-06 | 6.3 | 6.0 | 2.2e-09 | 0.68 | 0.42 | 0.48 | FALSE |
12 | GTEx | Thyroid | RP4-635E18.7 | 0.07 | 0.02 | lasso | 2 | 0.01 | 5.5e-02 | 8.0 | 7.9 | 2.5e-15 | 0.93 | 0.02 | 0.88 | FALSE |
13 | GTEx | Whole Blood | MTOR | 0.16 | 0.06 | enet | 18 | 0.07 | 5.1e-07 | 7.4 | 6.1 | 8.5e-10 | 0.66 | 0.45 | 0.54 | FALSE |
14 | METSIM | Adipose | EXOSC10 | 0.05 | 0.06 | lasso | 1 | 0.05 | 3.5e-08 | 6.8 | 6.8 | 1.4e-11 | 0.85 | 0.02 | 0.98 | FALSE |
15 | METSIM | Adipose | MTOR | 0.04 | 0.02 | bslmm | 434 | 0.02 | 1.5e-04 | 7.9 | 8.3 | 8.6e-17 | 0.89 | 0.04 | 0.96 | FALSE |
16 | ROSMAP | Brain Pre-frontal Cortex | EXOSC10 | 0.06 | 0.06 | lasso | 2 | 0.06 | 4.9e-08 | 8.2 | 8.1 | 6.4e-16 | 1.00 | 0.02 | 0.98 | FALSE |
17 | ROSMAP | Brain Pre-frontal Cortex | MTOR | 0.07 | 0.05 | bslmm | 423 | 0.04 | 2.0e-06 | 7.9 | 8.7 | 3.5e-18 | 0.87 | 0.07 | 0.93 | TRUE |
18 | ROSMAP | Brain Pre-frontal Cortex | RP4-635E18.7 | 0.23 | 0.09 | enet | 24 | 0.24 | 3.8e-30 | 6.0 | 5.8 | 5.3e-09 | 0.71 | 0.02 | 0.98 | FALSE |
19 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | MTOR | 0.02 | 0.02 | blup | 54 | 0.02 | 5.4e-03 | 7.9 | 8.1 | 4.9e-16 | 0.91 | 0.04 | 0.77 | FALSE |
20 | The Cancer Genome Atlas | Brain Lower Grade Glioma | MTOR | 0.03 | 0.01 | blup | 54 | 0.02 | 5.9e-03 | 7.9 | 7.8 | 4.1e-15 | 0.88 | 0.03 | 0.73 | FALSE |
21 | The Cancer Genome Atlas | Liver Hepatocellular Carcinoma | MASP2 | 0.05 | 0.03 | blup | 30 | 0.04 | 6.0e-03 | 3.1 | -7.2 | 6.5e-13 | -0.84 | 0.02 | 0.58 | FALSE |