TWAS
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About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Arm fat mass (left)
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chr3:84,317,575-86,808,226
Best TWAS P=2.73e-12 · Best GWAS P=7.24e-17 conditioned to 1.64e-06
84.5M
85M
85.5M
86M
86.5M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
2
The Cancer Genome Atlas
Brain Lower Grade Glioma
CADM2
0.06
0.00
blup
339
0.00
2.7e-01
-5.0
-7.0
2.7e-12
0.67
0.04
0.45
TRUE
1
METSIM
Adipose
CADM2
0.05
0.06
lasso
10
0.06
1.3e-09
4.7
5.5
3.5e-08
-0.18
1.00
0.00
TRUE
4
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
CADM2
0.05
0.03
lasso
3
0.04
5.0e-05
5.8
6.6
4.3e-11
-0.31
0.92
0.02
FALSE
3
The Cancer Genome Atlas
Lung Adenocarcinoma
CADM2
0.08
0.04
lasso
4
0.05
2.1e-06
5.8
6.4
1.7e-10
-0.36
0.98
0.00
FALSE