TWAS
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Models
Genes
Traits
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Traits
:
Arm fat mass (left)
:
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→
chr3:140,350,567-141,867,638
Best TWAS P=2.96e-16 · Best GWAS P=8.1e-15 conditioned to 0.000301
140.4M
140.6M
140.8M
141M
141.2M
141.4M
141.6M
141.8M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
5
The Cancer Genome Atlas
Soft Tissue Sarcoma
ZBTB38
0.04
0.03
lasso
3
0.04
3.0e-03
7.7
8.2
3.0e-16
0.59
0.02
0.71
TRUE
1
GTEx
Adipose Subcutaneous
ZBTB38
0.08
0.04
lasso
4
0.03
8.1e-04
7.8
7.7
9.6e-15
0.98
0.01
0.98
FALSE
2
GTEx
Testis
ZBTB38
0.14
0.06
lasso
8
0.05
2.8e-03
7.5
7.6
3.4e-14
0.60
0.06
0.90
FALSE
3
GTEx
Thyroid
ZBTB38
0.11
0.03
enet
32
0.04
2.9e-04
5.5
6.9
6.6e-12
0.62
0.11
0.88
FALSE
4
NTR
Blood
ZBTB38
0.03
0.01
lasso
3
0.01
2.2e-05
7.6
6.8
1.4e-11
0.88
0.01
0.99
FALSE