TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Arm fat-free mass (left)
:
←
→
chr10:117,949,460-119,582,073
Best TWAS P=8.94e-08 · Best GWAS P=5.89e-08 conditioned to 1
118M
118.2M
118.4M
118.6M
118.8M
119M
119.2M
119.4M
119.6M
0
2
4
6
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Artery Tibial
KIAA1598
0.07
0.02
lasso
2
0.02
5.1e-03
5.0
5.3
8.9e-08
0.95
0.04
0.96
TRUE
2
GTEx
Thyroid
KIAA1598
0.08
0.07
lasso
1
0.06
4.1e-05
5.3
-5.3
1.0e-07
-0.95
0.02
0.98
FALSE
3
YFS
Blood
KIAA1598
0.39
0.64
enet
21
0.64
1.0e-279
5.0
5.2
2.2e-07
0.97
0.06
0.94
FALSE
4
The Cancer Genome Atlas
Lung Squamous Cell Carcinoma
KIAA1598
0.04
0.04
enet
6
0.06
2.1e-07
5.2
5.1
2.8e-07
0.93
0.04
0.96
FALSE