TWAS
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Models
Genes
Traits
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Traits
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Arm fat-free mass (left)
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chr11:118,295,117-119,751,585
Best TWAS P=9.17e-19 · Best GWAS P=3.79e-16 conditioned to 0.913
118.4M
118.6M
118.8M
119M
119.2M
119.4M
119.6M
119.8M
0
5
10
15
physical position
-log10 P
Marginal
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Adipose Visceral Omentum
NLRX1
0.14
0.03
lasso
5
0.03
9.6e-03
8.0
-8.8
9.2e-19
-0.93
0.01
0.96
TRUE
4
The Cancer Genome Atlas
Prostate Adenocarcinoma
TREH
0.05
0.05
lasso
2
0.04
2.7e-05
5.8
5.8
5.0e-09
0.71
0.00
0.99
FALSE
5
The Cancer Genome Atlas
Thyroid Carcinoma
TREH
0.27
0.18
lasso
3
0.21
8.6e-20
5.8
5.8
8.8e-09
0.68
0.00
1.00
FALSE
2
GTEx
Pancreas
HINFP
0.19
0.13
lasso
4
0.10
4.4e-05
3.9
5.3
1.0e-07
0.34
0.55
0.12
FALSE
3
The Cancer Genome Atlas
Kidney Renal Clear Cell Carcinoma
NLRX1
0.05
0.03
enet
5
0.05
2.4e-06
3.9
-5.1
2.7e-07
-0.13
0.02
0.47
FALSE