Best TWAS P=1.15e-12 · Best GWAS P=3.9e-10 conditioned to 0.117
# | Study | Tissue | Gene | h2 | eQTL R2 | model | # weights | model R2 | model R2 P | eQTL GWAS Z | TWAS Z | TWAS P | Top SNP corr | PP3 | PP4 | joint |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | GTEx | Adipose Subcutaneous | FAM208A | 0.12 | 0.09 | enet | 11 | 0.12 | 1.1e-09 | -3.3 | 5.3 | 1.2e-07 | -0.82 | 0.03 | 0.97 | FALSE |
2 | GTEx | Cells Transformed fibroblasts | FAM208A | 0.10 | 0.00 | lasso | 4 | 0.00 | 1.3e-01 | -6.2 | 5.9 | 4.0e-09 | -0.82 | 0.01 | 0.97 | FALSE |
3 | YFS | Blood | CCDC66 | 0.11 | 0.09 | lasso | 8 | 0.11 | 6.0e-34 | -5.2 | -5.2 | 1.6e-07 | 0.53 | 0.79 | 0.21 | FALSE |
4 | The Cancer Genome Atlas | Breast Invasive Carcinoma | CCDC66 | 0.09 | 0.03 | lasso | 8 | 0.05 | 4.2e-11 | -4.6 | -6.5 | 1.1e-10 | 0.54 | 0.20 | 0.79 | FALSE |
5 | The Cancer Genome Atlas | Head and Neck Squamous Cell Carcinoma | CCDC66 | 0.05 | 0.05 | blup | 56 | 0.06 | 1.0e-07 | -6.2 | -7.0 | 2.8e-12 | 0.79 | 0.00 | 1.00 | FALSE |
6 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | C3orf63 | 0.03 | 0.01 | enet | 4 | 0.01 | 1.3e-02 | -6.2 | 5.7 | 1.3e-08 | -0.89 | 0.01 | 0.89 | FALSE |
7 | The Cancer Genome Atlas | Kidney Renal Clear Cell Carcinoma | CCDC66 | 0.09 | 0.05 | blup | 56 | 0.06 | 5.3e-07 | -5.2 | -5.2 | 2.4e-07 | 0.69 | 0.53 | 0.47 | FALSE |
8 | The Cancer Genome Atlas | Brain Lower Grade Glioma | CCDC66 | 0.16 | 0.13 | enet | 12 | 0.16 | 3.1e-17 | -5.2 | -5.2 | 1.7e-07 | 0.34 | 0.58 | 0.41 | FALSE |
9 | The Cancer Genome Atlas | Lung Adenocarcinoma | CCDC66 | 0.05 | 0.06 | blup | 56 | 0.05 | 9.7e-07 | -6.2 | -7.1 | 1.1e-12 | 0.73 | 0.00 | 1.00 | TRUE |
10 | The Cancer Genome Atlas | Lung Squamous Cell Carcinoma | CCDC66 | 0.03 | 0.03 | blup | 56 | 0.03 | 9.6e-05 | -4.5 | -5.8 | 7.5e-09 | 0.51 | 0.29 | 0.36 | FALSE |
11 | The Cancer Genome Atlas | Pheochromocytoma and Paraganglioma | CCDC66 | 0.08 | 0.01 | blup | 56 | 0.07 | 7.2e-04 | -5.2 | -5.2 | 1.5e-07 | 0.32 | 0.11 | 0.12 | FALSE |
12 | The Cancer Genome Atlas | Prostate Adenocarcinoma | CCDC66 | 0.15 | 0.10 | enet | 11 | 0.13 | 7.3e-14 | -4.5 | -5.4 | 7.1e-08 | 0.48 | 0.72 | 0.28 | FALSE |
13 | The Cancer Genome Atlas | Stomach Adenocarcinoma | CCDC66 | 0.05 | 0.01 | blup | 57 | 0.02 | 8.4e-03 | -4.6 | -5.9 | 4.2e-09 | 0.55 | 0.07 | 0.56 | FALSE |