[Hub]/) : Traits : Trunk fat percentage :

chr11:130,025,387-131,476,599

Best TWAS P=1.18e-12 · Best GWAS P=1.9e-10 conditioned to 0.033

Associated models

# Study Tissue Gene h2 eQTL R2 model # weights model R2 model R2 P eQTL GWAS Z TWAS Z TWAS P Top SNP corr PP3 PP4 joint
1 GTEx Adipose Subcutaneous SNX19 0.21 0.15 enet 24 0.16 2.3e-13 5.5 -6.1 1.1e-09 0.73 0.33 0.67 FALSE
2 GTEx Adipose Visceral Omentum SNX19 0.22 0.10 lasso 7 0.10 8.0e-06 5.5 -6.1 1.1e-09 0.63 0.14 0.85 FALSE
3 GTEx Adrenal Gland SNX19 0.24 0.16 lasso 4 0.06 3.2e-03 5.4 -6.2 7.8e-10 0.58 0.10 0.89 FALSE
4 GTEx Artery Coronary SNX19 0.25 0.16 lasso 11 0.18 1.4e-06 5.5 -5.1 3.0e-07 0.55 0.32 0.63 FALSE
5 GTEx Artery Tibial SNX19 0.22 0.14 lasso 6 0.20 1.5e-15 -2.8 -5.2 2.0e-07 0.57 0.16 0.84 FALSE
6 GTEx Brain Caudate basal ganglia SNX19 0.33 0.12 lasso 5 0.12 2.8e-04 5.4 -6.3 2.3e-10 0.57 0.08 0.85 FALSE
7 GTEx Brain Cortex SNX19 0.36 0.12 lasso 7 0.16 3.3e-05 5.1 -5.9 4.2e-09 0.53 0.05 0.92 FALSE
8 GTEx Brain Frontal Cortex BA9 SNX19 0.41 0.20 lasso 7 0.37 7.1e-11 -5.7 -6.5 7.9e-11 0.52 0.04 0.94 FALSE
9 GTEx Brain Hippocampus SNX19 0.24 0.07 enet 17 0.16 1.8e-04 -5.7 -6.2 4.3e-10 0.49 0.07 0.76 FALSE
10 GTEx Brain Hypothalamus SNX19 0.32 0.04 lasso 5 0.13 7.4e-04 6.3 -7.1 1.2e-12 0.67 0.04 0.93 TRUE
11 GTEx Brain Nucleus accumbens basal ganglia RP11-890B15.3 0.46 0.16 lasso 7 0.04 3.9e-02 -4.9 -5.4 5.6e-08 0.36 0.08 0.27 FALSE
12 GTEx Brain Putamen basal ganglia SNX19 0.35 -0.01 enet 18 0.02 1.4e-01 -2.8 -5.9 2.8e-09 0.30 0.06 0.40 FALSE
13 GTEx Breast Mammary Tissue (Female) RP11-890B15.3 0.17 0.01 lasso 4 0.02 1.0e-01 5.6 -5.3 1.1e-07 0.56 0.06 0.21 FALSE
14 GTEx Cells EBV-transformed lymphocytes SNX19 0.29 0.28 lasso 2 0.26 5.1e-09 5.5 -5.5 3.2e-08 0.55 0.48 0.51 FALSE
15 GTEx Esophagus Muscularis SNX19 0.31 0.18 enet 23 0.25 1.2e-15 5.4 -6.3 3.8e-10 0.76 0.08 0.92 FALSE
16 GTEx Heart Atrial Appendage SNX19 0.50 0.20 enet 32 0.32 4.9e-15 -6.0 -6.2 4.3e-10 0.83 0.02 0.98 FALSE
17 GTEx Heart Left Ventricle SNX19 0.21 0.06 lasso 4 0.05 9.7e-04 5.5 -6.2 6.3e-10 0.59 0.08 0.90 FALSE
18 GTEx Pancreas SNX19 0.35 0.12 enet 19 0.27 1.2e-11 5.5 -5.5 3.9e-08 0.63 0.08 0.91 FALSE
19 GTEx Pancreas RP11-890B15.3 0.16 0.02 lasso 2 0.01 1.9e-01 -6.3 -6.3 2.3e-10 0.60 0.04 0.88 FALSE
20 GTEx Skin Not Sun Exposed Suprapubic RP11-890B15.3 0.22 0.13 enet 16 0.21 9.0e-12 -2.8 -5.4 5.5e-08 0.49 0.96 0.04 FALSE
21 GTEx Stomach SNX19 0.39 0.29 lasso 13 0.27 2.0e-13 5.5 -6.2 4.4e-10 0.70 0.40 0.60 FALSE
22 GTEx Testis SNX19 0.59 0.25 enet 24 0.38 7.1e-18 -6.3 -6.1 1.4e-09 0.68 0.02 0.98 FALSE
23 METSIM Adipose RP11-890B15.3 0.12 0.12 lasso 5 0.12 9.4e-17 5.2 -5.5 3.0e-08 0.48 0.11 0.89 FALSE
24 METSIM Adipose SNX19 0.16 0.20 lasso 2 0.20 1.5e-28 5.2 -5.2 2.6e-07 0.54 0.83 0.17 FALSE
25 NTR Blood SNX19 0.06 0.05 lasso 6 0.06 9.9e-19 -3.0 -5.4 5.5e-08 0.53 0.98 0.02 FALSE
26 ROSMAP Brain Pre-frontal Cortex SNX19 0.41 0.49 lasso 6 0.51 2.7e-75 5.2 -6.2 4.0e-10 0.61 0.87 0.13 FALSE
27 The Cancer Genome Atlas Esophageal Carcinoma SNX19 0.15 0.08 lasso 6 0.12 1.4e-04 5.2 -6.3 3.6e-10 0.66 0.04 0.91 FALSE
28 The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma SNX19 0.11 0.19 enet 15 0.24 3.2e-26 5.2 -6.0 1.8e-09 0.61 0.84 0.16 FALSE
29 The Cancer Genome Atlas Brain Lower Grade Glioma SNX19 0.17 0.20 lasso 6 0.23 9.8e-26 5.2 -5.9 3.3e-09 0.61 0.78 0.22 FALSE
30 The Cancer Genome Atlas Liver Hepatocellular Carcinoma SNX19 0.12 0.05 blup 98 0.07 3.0e-04 -3.2 -5.7 1.0e-08 0.49 0.09 0.73 FALSE
31 The Cancer Genome Atlas Pancreatic Adenocarcinoma SNX19 0.06 0.04 blup 100 0.06 1.3e-03 5.6 -6.4 1.3e-10 0.76 0.04 0.61 FALSE