TWAS
hub
About
Usage
Models
Genes
Traits
[Hub]/) :
Traits
:
Trunk predicted mass
:
←
→
chr9:128,980,174-130,673,419
Best TWAS P=5.07e-10 · Best GWAS P=5.13e-10 conditioned to 0.174
129M
129.2M
129.4M
129.6M
129.8M
130M
130.2M
130.4M
130.6M
0
2
4
6
8
physical position
-log10 P
Conditional
▼
Associated models
#
Study
Tissue
Gene
h2
eQTL R2
model
# weights
model R2
model R2 P
eQTL GWAS Z
TWAS Z
TWAS P
Top SNP corr
PP3
PP4
joint
1
GTEx
Esophagus Mucosa
RALGPS1
0.05
0.01
lasso
6
0.02
2.7e-02
-6.2
-6.2
5.1e-10
0.91
0.03
0.92
TRUE
3
GTEx
Thyroid
RALGPS1
0.09
0.04
enet
12
0.01
2.7e-02
-5.9
5.9
4.1e-09
-0.78
0.03
0.96
FALSE
4
METSIM
Adipose
RALGPS1
0.04
0.04
lasso
3
0.04
2.8e-06
-5.5
-5.7
9.5e-09
0.93
0.02
0.98
FALSE
2
GTEx
Skin Sun Exposed Lower leg
RALGPS1
0.06
0.02
lasso
6
0.01
2.5e-02
-6.2
-5.6
1.7e-08
0.93
0.04
0.95
FALSE
5
YFS
Blood
RALGPS1
0.08
0.13
lasso
18
0.15
1.1e-45
-6.2
-5.6
2.8e-08
0.93
0.02
0.98
FALSE